Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05271 ATGGCTTGGAAGCAACTCAGCAATGCTTTTGATACTTCCTCTGCGGCGTCTTTGAAAAAATACGACGTATTTCTTAGCTTTCGAGGTGAGGATACTCGCAAAAGCATCACGAGCCATCTTTATGATGCTTTGAGTCGAAAGAAATTTGAAACCTTTATTGACAACAATGAGCTTAAAAAAGGAGATGAGATCTCTCCAACACTCATCAAAGCCATTGAGGAGTCACATCTATCTATTGTCATCTTCTCAGAAAACTATGCTTCCTCAAAGTGGTGCTTGAATGAGCTCAAAAAGATTCTTGAATGCAAGAGATATAAGAAGCAGATTGTGATACCTGTTTTTTACAACATAGATCCGTCACACGTGAGGAACCAGACTGGGAGGTACAAGCAAGCCTTTGAAAAACATAAGCGAGAGTTGAAGCACAATTATGACAGGTTGAAGATATGGAAAGCGGCTCTCACTGAGGCAGCTAGTTTAGTTGGTTGGGACTTTCAAAATTACAGGACTGAATCAGACTTCATCAAGGACATTGTCAAAGATGTTTTGCAGAAACTGAATCTCAAGTACCAATATGAAATTAAGGGGCTTGTTGGAATTGAGAAGAATTATGAACAAATTGAATCAATACTGAAAATTGGGTCAAATGAAGTTATAGTCCTTGGAATATGGGGCATGGGTGGCATAGGAAAGACAACCCTTGCTAAGGCTTTATACGCCAAACTGCATTCCCAATTCGAAGGTTGTTGCTTCCTCAATGTAATGGATGAGTCAAACAAGTATGGACTTGATGGTGTACGCTCTAAATTTTTTTCTACATTGTTAGAGGAAGAAAATCTTCATCCTGATGCATCCTACATAGAATCCCATTTTTCCGTGAGAAGGATTGCCCGTAAAAAAGTTTTCATTGTGTTGGATGGCGTGGAAACCTTAGACAAAATTGAAGATCTTATCCTAAAACTTGATGGGTTGGGACCAGGTAGTAGGGTAGTTATTACTACTAGAGATAAGCACATATTTAGTCTGTTCAGTAAATGTGAAATATATGAGGTTCAGGTATTAAACAAACACGATTCTCTTCAGCTATTCAGTTTGACAGTTTTCGGAGAAAAACATCCTGAAATTGGATATCAAGATCTATCAGAAAGAGTAATTGCCTATTGCAAAGGCAATCCTCTGGCTTTAAAAGTTATAGGTTCAAATCTCCGTTCAAGAGGCAAAGAAGCATGGGAAAATGAATTGAAAAAGCTGGAAAAGATTCCTAATAAGAAAATTTGCGATGTGTTAAAATTGAGTTTTGATGACTTAGATCGTTGTCAAAAAGCTATATTTCTAGACATCATATGCTTTTTGAGAGAAAAGAGTAAAGATTTTGTAATAGAATTATTGGAAGCTTGTGAGTTGTTTGCAACAAGTGGGATAGAAGTCCTTCTAAATAAATCTCTCATACAAATAAAACTAATTTGGCTATCGTTTAGCAATTCGGAAGTCGATGGTTTAGAAATGCATGATTTGTTACAAGAAATGGGACGGGATATTGTTAATCAAGAATCTAAAGATCCTGGAAAACGAAGTCGATTGTGGAAAGCTGAAGAAATATGCGATCTATTGAAAAATAACAAGGGAACAGAAGCTGTGGAAGCTATAACATTTGATAGAACAGAAGTTGGGGATCTTTACTTAAAGTCTGACTCCTTCAAAAGGATGACAAACTTAAGATATCTTAAAATCTATGATAGAACTGATTGTAGAGCATGCAATGTGTACTTTCCTGATGGTCTCGAGTGGCTTTCTGATAAATTAAGGTACCTTCGATGGGATGCTTACTGCCTTGAGTCTTTGCCAACAACCTTTTGTGCTGAAATGCTTCTTGAGCTCAACCTGACTCGTAGCAAGCTTAAAAAACTATGGGATGGAGTTCAGAATCTTGTGAATTTAAAGATAGTTTTGCTTGAGTTCTCCTACGATCTGATTGAGATCCCAGACTTATCGAGGGCTACAAATCTTGAAAGGGTGCATCTCTATAAATGCGAAAGTCTGTGTCAGCTCCATCCATCCATCTTATGTCTCCCCCGACTTAAACATCTAGATTTACGAGGTTGCATAAAGATTGAAAGCCTTAAAACCAACATTCATTCTAAATCTCTCCGTAATCTCTTAGTCAATGGTTGTTCATCTCTCACCGAATTTTCGGTGACATCGGAGGCAATGACAAATTTATCCTTACATGGCACCGCTATACATGAATTGTCTTCATCGATTTGGCGTAATACCAAGCTTACTACTCTTGACCTATCTGAATGTAACAAGCTTAACATTGTTGGGAGTAAGTTATCAAATCGTCATGGAGTGGGGTCTGTTACAGAACTAAACCTTTCTGGGTGCACAGAAATTGATGCATTAAATCTGCGGTTCATTCTTGATGGCATATGGTCTTTAAATCGACTAAAAATGAGTGAGTGTTTCAACTTAGAAGGTCTCCCTGAGAACATCAAAAAGCACTCAAGGCTGAGCTGGCTTGATATAAATAATTGCAGGAAACTTGTGTCTCTAGCAGAGCTTCCGCCATCCCTGCTATATTTGAAAGCCCGTAATTGCACTTATCTGGACACAGACTCCTCCCAACAGTTATTGCTTGAGAACACAGTACAAACTTTCTCCGACGACCCTCTTATTGTAAATGGCGGTGGTCTATATTACTCTTTTTTGCCAGGAGCACAAGTTCCGTGCCAGTTTGATTTTCAGACAACAGAGGCTTCAATAACTATTCCTCCCATTCCAAAATCTGGCCTATGTGGTTTCATATTTTGTGTCATTCTATCCGAGGGATTTCATGCTCACCTTCATTCTCTTGGTCCCCTTGATTGTATCATCTTTGAAGACGACAAAGAAGTCGACAGACGTCATATTGGTCTCAATTATCCCGGGAAATTAATTTCAGATCATGTATTGATATGTTGGCATCATTACAACAGACAAGAAAGTGGAAGTTATGCATTTTGCAACCTATCATTTCAATTCGTATTTCTAGGTCAGAAGGAACAAATGTGGTGGTCAACGGAGGGGATAAAAGGGTGCGGCGTCTTACCTGTATATTCCTCAAAACATAAGTTGAAGCTGGATGGTAGTAGTCGTGTTACTAACAAGATTGTTGAATTAAAATTAAAATCCACTGTTCAAGACTCTGATTGGAATATGAAAAATGAGATTAAAGTCAAAAGCTCTAACAATGAAAATGAAGATGACCAGGAACAACCTTTTTATTCTCGTAAAGAAGAAGAACAACCTTCTGTTAGTAGACCTCCTATTAAACATGTATATGTTAGGAGAGGAAAAAAGCTACATTCTGTTGTCTAA 3357 0.3801 MAWKQLSNAFDTSSAASLKKYDVFLSFRGEDTRKSITSHLYDALSRKKFETFIDNNELKKGDEISPTLIKAIEESHLSIVIFSENYASSKWCLNELKKILECKRYKKQIVIPVFYNIDPSHVRNQTGRYKQAFEKHKRELKHNYDRLKIWKAALTEAASLVGWDFQNYRTESDFIKDIVKDVLQKLNLKYQYEIKGLVGIEKNYEQIESILKIGSNEVIVLGIWGMGGIGKTTLAKALYAKLHSQFEGCCFLNVMDESNKYGLDGVRSKFFSTLLEEENLHPDASYIESHFSVRRIARKKVFIVLDGVETLDKIEDLILKLDGLGPGSRVVITTRDKHIFSLFSKCEIYEVQVLNKHDSLQLFSLTVFGEKHPEIGYQDLSERVIAYCKGNPLALKVIGSNLRSRGKEAWENELKKLEKIPNKKICDVLKLSFDDLDRCQKAIFLDIICFLREKSKDFVIELLEACELFATSGIEVLLNKSLIQIKLIWLSFSNSEVDGLEMHDLLQEMGRDIVNQESKDPGKRSRLWKAEEICDLLKNNKGTEAVEAITFDRTEVGDLYLKSDSFKRMTNLRYLKIYDRTDCRACNVYFPDGLEWLSDKLRYLRWDAYCLESLPTTFCAEMLLELNLTRSKLKKLWDGVQNLVNLKIVLLEFSYDLIEIPDLSRATNLERVHLYKCESLCQLHPSILCLPRLKHLDLRGCIKIESLKTNIHSKSLRNLLVNGCSSLTEFSVTSEAMTNLSLHGTAIHELSSSIWRNTKLTTLDLSECNKLNIVGSKLSNRHGVGSVTELNLSGCTEIDALNLRFILDGIWSLNRLKMSECFNLEGLPENIKKHSRLSWLDINNCRKLVSLAELPPSLLYLKARNCTYLDTDSSQQLLLENTVQTFSDDPLIVNGGGLYYSFLPGAQVPCQFDFQTTEASITIPPIPKSGLCGFIFCVILSEGFHAHLHSLGPLDCIIFEDDKEVDRRHIGLNYPGKLISDHVLICWHHYNRQESGSYAFCNLSFQFVFLGQKEQMWWSTEGIKGCGVLPVYSSKHKLKLDGSSRVTNKIVELKLKSTVQDSDWNMKNEIKVKSSNNENEDDQEQPFYSRKEEEQPSVSRPPIKHVYVRRGKKLHSVV 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05271 1118 SMART till_3 20 160 IPR000157 GO:0007165
Vivi3g05271 1118 SUPERFAMILY L domain-like 502 872 - -
Vivi3g05271 1118 Pfam Leucine Rich Repeat 623 641 IPR011713 -
Vivi3g05271 1118 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 772 IPR044974 GO:0006952
Vivi3g05271 1118 MobiDBLite consensus disorder prediction 1070 1105 - -
Vivi3g05271 1118 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 188 - -
Vivi3g05271 1118 Gene3D - 353 437 IPR042197 -
Vivi3g05271 1118 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 163 IPR035897 -
Vivi3g05271 1118 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 447 IPR027417 -
Vivi3g05271 1118 MobiDBLite consensus disorder prediction 1073 1099 - -
Vivi3g05271 1118 Gene3D - 18 183 IPR035897 -
Vivi3g05271 1118 PRINTS Disease resistance protein signature 388 402 - -
Vivi3g05271 1118 PRINTS Disease resistance protein signature 295 309 - -
Vivi3g05271 1118 PRINTS Disease resistance protein signature 220 235 - -
Vivi3g05271 1118 PRINTS Disease resistance protein signature 755 771 - -
Vivi3g05271 1118 Pfam NB-ARC domain 202 422 IPR002182 GO:0043531
Vivi3g05271 1118 Gene3D Ribonuclease Inhibitor 546 737 IPR032675 -
Vivi3g05271 1118 Pfam TIR domain 20 192 IPR000157 GO:0007165
Vivi3g05271 1118 Gene3D - 184 349 IPR027417 -
Vivi3g05271 1118 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Vivi3g05271 1118 Gene3D Ribonuclease Inhibitor 747 887 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05271 Vivi-Chr3 107248405 107253358 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05271 16 863 WRKY Transcription Factor Family AT4G12020 32.639 9.98e-103 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05271 - - vvo:131662268 2021.9