Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05270 ATGGCTTGGAAGCAACTCAGCAATGCTTTTGATACTTCCTCTGCGGCGTCTTTGAAAAAATACGACGTATTTCTTAGCTTTCGAGGTGAGGATACTCGCAAAAGCATCACGAGCCATCTTTATGATGCTTTGAGTCGAAAGAAATTTGAAACCTTTATTGACAACAATGAGCTTAAAAAAGGAGATGAGATCTCTCCAACACTCATCAAAGCCATTGAGGAGTCACATCTATCTATTGTCATCTTCTCAGAAAACTATGCTTCCTCAAAGTGGTGCTTGAATGAGCTCAAAAAGATTCTTGAATGCAAGAGATATAAGAAGCAGATTGTGATACCTGTTTTTTACAACATAGATCCGTCACACGTGAGGAACCAGACTGGGAGGTACAAGCAAGCCTTTGAAAAACATAAGCGAGAGTTGAAGCACAATTATGACAGGTTGAAGATATGGAAAGCGGCTCTCACTGAGGCAGCTAGTTTAGTTGGTTGGGACTTTCAAAATTACAGGACTGAATCAGACTTCATCAAGGACATTGTCAAAGATGTTTTGCAGAAACTGAATCTCAAGTACCAATATGAAATTAAGGGGCTTGTTGGAATTGAGAAGAATTATGAACAAATTGAATCAATACTGAAAATTGGGTCAAATGAAGTTATAGTCCTTGGAATATGGGGCATGGGTGGCATAGGAAAGACAACCCTTGCTAAGGCTTTATACGCCAAACTGCATTCCCAATTCGAAGGTTGTTGCTTCCTCAATGTAATGGATGAGTCAAACAAGTATGGACTTGATGGTGTACGCTCTAAATTTTTTTCTACATTGTTAGAGGAAGAAAATCTTCATCCTGATGCATCCTACATAGAATCCCATTTTTCCGTGAGAAGGATTGCCCGTAAAAAAGTTTTCATTGTGTTGGATGGCGTGGAAACCTTAGACAAAATTGAAGATCTTATCCTAAAACTTGATGGGTTGGGACCAGGTAGTAGGGTAGTTATTACTACTAGAGATAAGCACATATTTAGTCTGTTCAGTAAATGTGAAATATATGAGGTTCAGGTATTAAACAAACACGATTCTCTTCAGCTATTCAGTTTGACAGTTTTCGGAGAAAAACATCCTGAAATTGGATATCAAGATCTATCAGAAAGAGTAATTGCCTATTGCAAAGGCAATCCTCTGGCTTTAAAAGTTATAGGTTCAAATCTCCGTTCAAGAGGCAAAGAAGCATGGGAAAATGAATTGAAAAAGCTGGAAAAGATTCCTAATAAGAAAATTTGCGATGTGTTAAAATTGAGTTTTGATGACTTAGATCGTTGTCAAAAAGCTATATTTCTAGACATCATATGCTTTTTGAGAGAAAAGAGTAAAGATTTTGTAATAGAATTATTGGAAGCTTGTGAGTTGTTTGCAACAAGTGGGATAGAAGTCCTTCTAAATAAATCTCTCATACAAATAAAACTAATTTGGCTATCGTTTAGCAATTCGGAAGTCGATGGTTTAGAAATGCATGATTTGTTACAAGAAATGGGACGGGATATTGTTAATCAAGAATCTAAAGATCCTGGAAAACGAAGTCGATTGTGGAAAGCTGAAGAAATATGCGATCTATTGAAAAATAACAAGGGAACAGAAGCTGTGGAAGCTATAACATTTGATAGAACAGAAGTTGGGGATCTTTACTTAAAGTCTGACTCCTTCAAAAGGATGACAAACTTAAGATATCTTAAAATCTATGATAGAACTGATTGTAGAGCATGCAATGTGTACTTTCCTGATGGTCTCGAGTGGCTTTCTGATAAATTAAGGTACCTTCGATGGGATGCTTACTGCCTTGAGTCTTTGCCAACAACCTTTTGTGCTGAAATGCTTCTTGAGCTCAACCTGACTCGTAGCAAGCTTAAAAAACTATGGGATGGAGTTCAGGTACAAAAGTGTTTCGACTTTCGATATACATTTAAAACTGTAGATAAAGCTTTGATGCTCATTCACAAAATTGCTAGGTCTTACAAGTGTCGGGCACAAAACTTCAACAAGACATGCTTCTATTTCTGCTTAATTCGGTTTAATTTCTGTTTTAATCAATACTCATGCTTGATTATGAATTTAATGGTTTCTCTGCACTGCCATGTTTATTTCTTGTTACAGAATCTTGTGAATTTAAAGATAGTTTTGCTTGAGTTCTCCTACGATCTGATTGAGATCCCAGACTTATCGAGGGCTACAAATCTTGAAAGGGTGCATCTCTATAAATGCGAAAGTCTGTGTCAGCTCCATCCATCCATCTTATGTCTCCCCCGACTTAAACATCTAGATTTACGAGGTTGCATAAAGATTGAAAGCCTTAAAACCAACATTCATTCTAAATCTCTCCGTAATCTCTTAGTCAATGGTTGTTCATCTCTCACCGAATTTTCGGTGACATCGGAGGCAATGACAAATTTATCCTTACATGGCACCGCTATACATGAATTGTCTTCATCGATTTGGCGTAATACCAAGCTTACTACTCTTGACCTATCTGAATGTAACAAGCTTAACATTGTTGGGAGTAAGTTATCAAATCGTCATGGAGTGGGGTCTGTTACAGAACTAAACCTTTCTGGGTGCACAGAAATTGATGCATTAAATCTGCGGTTCATTCTTGATGGCATATGGTCTTTAAATCGACTAAAAATGAGTGAGTGTTTCAACTTAGAAGGTCTCCCTGAGAACATCAAAAAGCACTCAAGGCTGAGCTGGCTTGATATAAATAATTGCAGGAAACTTGTGTCTCTAGCAGAGCTTCCGCCATCCCTGCTATATTTGAAAGCCCGTAATTGCACTTATCTGGACACAGACTCCTCCCAACAGTTATTGCTTGAGAACACAGTACAAACTTTCTCCGACGACCCTCTTATTGTAAATGGCGGTGGTCTATATTACTCTTTTTTGCCAGGAGCACAAGTTCCGTGCCAGTTTGATTTTCAGACAACAGAGGCTTCAATAACTATTCCTCCCATTCCAAAATCTGGCCTATGTGGTTTCATATTTTGTGTCATTCTATCCGAGGGATTTCATGCTCACCTTCATTCTCTTGGTCCCCTTGATTGTATCATCTTTGAAGACGACAAAGAAGTCGACAGACGTCATATTGGTCTCAATTATCCCGGGAAATTAATTTCAGATCATGTATTGATATGTTGGCATCATTACAACAGACAAGAAAGTGGAAGTTATGCATTTTGCAACCTATCATTTCAATTCGTATTTCTAGGTCAGAAGGAACAAATGTGGTGGTCAACGGAGGGGATAAAAGGGTGCGGCGTCTTACCTGTATATTCCTCAAAACATAAGTTGAAGCTGGATGGTAGTAGTCGTGTTACTAACAAGATTGTTGAATTAAAATTAAAATCCACTGTTCAAGACTCTGATTGGAATATGAAAAATGAGATTAAAGTCAAAAGCTCTAACAATGAAAATGAAGATGACCAGGAACAACCTTTTTATTCTCGTAAAGAAGAAGAACAACCTTCTGTTAGTAGACCTCCTATTAAACATGTATATGTTAGGAGAGGAAAAAAGCTACATTCTGTTGTCTAA 3579 0.3769 MAWKQLSNAFDTSSAASLKKYDVFLSFRGEDTRKSITSHLYDALSRKKFETFIDNNELKKGDEISPTLIKAIEESHLSIVIFSENYASSKWCLNELKKILECKRYKKQIVIPVFYNIDPSHVRNQTGRYKQAFEKHKRELKHNYDRLKIWKAALTEAASLVGWDFQNYRTESDFIKDIVKDVLQKLNLKYQYEIKGLVGIEKNYEQIESILKIGSNEVIVLGIWGMGGIGKTTLAKALYAKLHSQFEGCCFLNVMDESNKYGLDGVRSKFFSTLLEEENLHPDASYIESHFSVRRIARKKVFIVLDGVETLDKIEDLILKLDGLGPGSRVVITTRDKHIFSLFSKCEIYEVQVLNKHDSLQLFSLTVFGEKHPEIGYQDLSERVIAYCKGNPLALKVIGSNLRSRGKEAWENELKKLEKIPNKKICDVLKLSFDDLDRCQKAIFLDIICFLREKSKDFVIELLEACELFATSGIEVLLNKSLIQIKLIWLSFSNSEVDGLEMHDLLQEMGRDIVNQESKDPGKRSRLWKAEEICDLLKNNKGTEAVEAITFDRTEVGDLYLKSDSFKRMTNLRYLKIYDRTDCRACNVYFPDGLEWLSDKLRYLRWDAYCLESLPTTFCAEMLLELNLTRSKLKKLWDGVQVQKCFDFRYTFKTVDKALMLIHKIARSYKCRAQNFNKTCFYFCLIRFNFCFNQYSCLIMNLMVSLHCHVYFLLQNLVNLKIVLLEFSYDLIEIPDLSRATNLERVHLYKCESLCQLHPSILCLPRLKHLDLRGCIKIESLKTNIHSKSLRNLLVNGCSSLTEFSVTSEAMTNLSLHGTAIHELSSSIWRNTKLTTLDLSECNKLNIVGSKLSNRHGVGSVTELNLSGCTEIDALNLRFILDGIWSLNRLKMSECFNLEGLPENIKKHSRLSWLDINNCRKLVSLAELPPSLLYLKARNCTYLDTDSSQQLLLENTVQTFSDDPLIVNGGGLYYSFLPGAQVPCQFDFQTTEASITIPPIPKSGLCGFIFCVILSEGFHAHLHSLGPLDCIIFEDDKEVDRRHIGLNYPGKLISDHVLICWHHYNRQESGSYAFCNLSFQFVFLGQKEQMWWSTEGIKGCGVLPVYSSKHKLKLDGSSRVTNKIVELKLKSTVQDSDWNMKNEIKVKSSNNENEDDQEQPFYSRKEEEQPSVSRPPIKHVYVRRGKKLHSVV 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05270 1192 Gene3D - 353 437 IPR042197 -
Vivi3g05270 1192 MobiDBLite consensus disorder prediction 1147 1173 - -
Vivi3g05270 1192 Gene3D Ribonuclease Inhibitor 515 811 IPR032675 -
Vivi3g05270 1192 PRINTS Disease resistance protein signature 295 309 - -
Vivi3g05270 1192 PRINTS Disease resistance protein signature 220 235 - -
Vivi3g05270 1192 PRINTS Disease resistance protein signature 829 845 - -
Vivi3g05270 1192 PRINTS Disease resistance protein signature 388 402 - -
Vivi3g05270 1192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 447 IPR027417 -
Vivi3g05270 1192 Gene3D Ribonuclease Inhibitor 812 958 IPR032675 -
Vivi3g05270 1192 SMART till_3 20 160 IPR000157 GO:0007165
Vivi3g05270 1192 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 163 IPR035897 -
Vivi3g05270 1192 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 188 - -
Vivi3g05270 1192 Pfam NB-ARC domain 202 422 IPR002182 GO:0043531
Vivi3g05270 1192 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 845 IPR044974 GO:0006952
Vivi3g05270 1192 Pfam TIR domain 20 192 IPR000157 GO:0007165
Vivi3g05270 1192 SUPERFAMILY L domain-like 502 944 - -
Vivi3g05270 1192 Gene3D - 184 349 IPR027417 -
Vivi3g05270 1192 Pfam Leucine Rich Repeat 623 641 IPR011713 -
Vivi3g05270 1192 Gene3D - 18 183 IPR035897 -
Vivi3g05270 1192 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Vivi3g05270 1192 MobiDBLite consensus disorder prediction 1144 1179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05270 Vivi-Chr3 107248405 107253358 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05270 716 937 WRKY Transcription Factor Family AT4G12020 31.982 1.43e-14 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05270 - - vvo:131662268 2405.56