Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05258 ATGGCGGACTCCGACAACGACTCCGGCGGTCCACACGGCGGAGGATCGAGCGCTCATGGCAGCGAGATGTCACCGAGAGAGCAAGACCGTTTCCTTCCGATAGCGAACGTAAGCAGAATCATGAAGAAGGCACTTCCAGCGAACGCCAAGATCTCAAAGGACGCCAAAGAAACAGTTCAAGAGTGCGTTTCAGAGTTCATCAGCTTCATCACCGGTGAAGCCTCCGACAAGTGCCAACGCGAGAAGCGGAAGACGATCAACGGCGACGATTTGCTGTGGGCGATGACGACGCTCGGGTTCGAGGAATACGTGGAGCCTCTCAAAGGCTATCTTCAGAGGTTTAGGGAGATGGAAGGAGAGAAGACTGTGGTGGCGCGTGACAAGGACGCGCCTCAAGGTTCTAATAGTGTAAACAACAGTTCGTTTGAGAGTGGTGGTAATTATGGTGCGGGAATGATGATGCATCAAGGACACGTGTATGGTTCTGGTGGATTTCATCAAGTTATGGGTAAGGGTGGGCCTGGGTATCCTGGGCCTGGGCCTGGACCTAATTCTGGTAGGCCCAGATAG 570 0.5368 MADSDNDSGGPHGGGSSAHGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKGYLQRFREMEGEKTVVARDKDAPQGSNSVNNSSFESGGNYGAGMMMHQGHVYGSGGFHQVMGKGGPGYPGPGPGPNSGRPR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05258 189 SUPERFAMILY Histone-fold 28 131 IPR009072 GO:0046982
Vivi3g05258 189 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Vivi3g05258 189 MobiDBLite consensus disorder prediction 122 142 - -
Vivi3g05258 189 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vivi3g05258 189 FunFam Nuclear transcription factor Y subunit B-3 20 144 - -
Vivi3g05258 189 Gene3D Histone, subunit A 18 144 IPR009072 GO:0046982
Vivi3g05258 189 MobiDBLite consensus disorder prediction 1 29 - -
Vivi3g05258 189 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Vivi3g05258 189 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Vivi3g05258 189 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Vivi3g05258 189 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 132 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vivi3g05258 189 MobiDBLite consensus disorder prediction 163 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05258 Vivi-Chr3 106800454 106801901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05258 1 160 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.222 1.44e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi3g05258 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05258 K08065 - gmx:100813169 263.077