Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05251 ATGGGAACTTACATTGAAAATCATGTAGAAGAGAATGAACACATTTTCCGCAGCCAATATTCGCCCGTTCCGGTACCCGAAAACGTGACATTGCCCGAATTCGTGCTCCAAAATGTTGAGTTTTATGGTGATAAGGTTGCATTTGTGGATGCTGAGAGTGGAAAAGAGGTTACTTATAATGAGGTTGCTAGAGACATATATAGATTTTCAAAGGCTTTAAGATCTCTTGGTTTGAGAAAAGGGAATGTTGTTATTGTTGTGCTTCCAAATGTTGTTGAGTATGCCATTGTTGCTTTGGGGATTATGGCTTCTGGTGGTGTGTTTTCTGGTGCAAATCCATCTTCACATACTTCAGAAATTAAGAAACAAGTTGAGTCTGCTGATGCCAAGTTGATTGTCACCAATAGTACAACCTATGAAAAGGTGAAAAGTTTAGGGCTACCTGTCATTGTCTTAGACGACGAAATTGTTGAGGATGCGATGAACTGGAAGAAACTTCTTGAGGCAGCAGACAGGGCAGGGGATGATCAAATGAAAGAACCAATACACCAAAACGATTTATGCGCCATGCCATTCTCGTCTGGCACGACTGGAATGTCGAAGGGAGTGATGCTTACACACAGAAACCTTGTAGCAAATCTTTGCTCTACACTTTTTGCTGTAGTGCCAGAAATGATTGGTAAAGTTACCACATTAGGGTTGATTCCATTCTTTCATATCTATGGCATCACTGGAATTTGCTGTGCAACTATAAGGAATAAAGGAAAGGTTGTGGTGATGGGAAGATATGATTTGAAATCATTTTTGAATGCTTTGATTAGGCATGAGGTTACATTTGCACCTATTGTTCCACCTATCATTCTTGGATTGGTTAAAAATCCTATTGTGGATGAGTTTGATCTTAGTAAGCTTAAACTTCAAGCTGTGATGACCGCTGCGGCGCCACTTGCACCCGAATTGCTTACTTCCTTCGAACACAAGTTTCCAGGTGTTCTTGTTCAAGAGGCATATGGACTAACTGAGCATAGTTGCATCACACTTACATTTGCACAAAAGAAAAGTGGAAATGCACATAAGAATTCAGTTGGTTTCATTCTTCCAAATTTGGAAGTCAAATTCATTGATCCTGAGACAGGTAAGTCCCTCCCAAGGAACACACCAGGGGAACTTTGTGTAAGAAGCCAATGTGTCATGCAAGGTTACTATAAGCAAGTTGATGAGACTGCTCAGACAATTGACAAGAACGGATGGCTTCACACTGGTGACGTTGGATTCATCGATGACGAAGAAAATGTTTTTATCGTTGATCGTATCAAGGAGTTGATTAAATATAAAGGCTTCCAAGTTGCTCCTGCAGAACTGGAGGCTATCTTGCTGTCTCATTCCTCGGTCGAAGACGCAGCAGTCGTACCATTGCCGGATGAAGAGGCAGGTGAAATTCCAGCTGCAAGTGTTGTTTTGAGCAAAGGTGCAAAGGAGAGTGAAGAGGACATTATGAAATTTGTTGCTTCTAATGCAGCTCATTACAAGAAAGTGAGAGTGGTTCACTTTGTGGAAGCTATACCAAAGTCACCCTCTGGTAAAATAATGAGGAGGCTAGTCAAAGAGAAGATGTTGGAAAGATTAAGGAAAATAATACCTTAA 1644 0.4088 MGTYIENHVEENEHIFRSQYSPVPVPENVTLPEFVLQNVEFYGDKVAFVDAESGKEVTYNEVARDIYRFSKALRSLGLRKGNVVIVVLPNVVEYAIVALGIMASGGVFSGANPSSHTSEIKKQVESADAKLIVTNSTTYEKVKSLGLPVIVLDDEIVEDAMNWKKLLEAADRAGDDQMKEPIHQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFAVVPEMIGKVTTLGLIPFFHIYGITGICCATIRNKGKVVVMGRYDLKSFLNALIRHEVTFAPIVPPIILGLVKNPIVDEFDLSKLKLQAVMTAAAPLAPELLTSFEHKFPGVLVQEAYGLTEHSCITLTFAQKKSGNAHKNSVGFILPNLEVKFIDPETGKSLPRNTPGELCVRSQCVMQGYYKQVDETAQTIDKNGWLHTGDVGFIDDEENVFIVDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPLPDEEAGEIPAASVVLSKGAKESEEDIMKFVASNAAHYKKVRVVHFVEAIPKSPSGKIMRRLVKEKMLERLRKIIP 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05251 547 Gene3D - 13 439 IPR042099 -
Vivi3g05251 547 Gene3D - 440 542 IPR045851 -
Vivi3g05251 547 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 439 - -
Vivi3g05251 547 Pfam AMP-binding enzyme 38 444 IPR000873 -
Vivi3g05251 547 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Vivi3g05251 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 537 - -
Vivi3g05251 547 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Vivi3g05251 547 SUPERFAMILY Acetyl-CoA synthetase-like 14 541 - -
Vivi3g05251 547 CDD 4CL 25 532 - -
Vivi3g05251 547 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05251 Vivi-Chr3 106422048 106424575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05251 10 544 Monolignol Biosynthesis Gene Families AT1G62940 73.184 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05251 K01904 - gmx:100811418 924.85