Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05243 ATGGAGCATGAATATCCTTTCATTCACAATGATCAAAACTCAATATCAAGTTCTGGTTCATCTATGTTGCAGCAAACTAGTGCCTCTACAGATGCTGAAAAAACATCTACAACAATGAACCCGACAAAGCTTGCCGTTGTGCCACAATTGACAAGGCCAGAGCAAAATTCCTTGCCATTAAAAAATGTGACAAAAATCATGAGAAAAGGTTTACCACCACACATAAAAATCTCGGATGGCGCAAAGGAGATGGCTGAACAAAGTGCCTCAAAGTTCATTAGCATGATAACCAAAAAAGCCACTGAGCGTTGCATAAGAGAGTCAAGAAAAATTTTAGGTGCTGAAGATCTATTATGGGCCATGATGAGTTTAGGTTACCATAACTATTTTAAGAGTTTGAGCTTATATCTCGAACGCTATCGCTATAGTAATGGGACTAGGCCTATGCAACTGGTTTGTGAGATTCCAAAGCCCATCTTGCCACCTTGTGAAGTTTTTCAACAAGGCTTACCACCACCACCACCACCGGTTGCTCTTGAGGCAAACTCGTCGATGAACCGAAACAGTTCTATTGAGATTGCTGAAGAAATGAACATTGATGAGTTTTGGGATGAACTGAGTAATTTGGGTGATGACTAG 639 0.4053 MEHEYPFIHNDQNSISSSGSSMLQQTSASTDAEKTSTTMNPTKLAVVPQLTRPEQNSLPLKNVTKIMRKGLPPHIKISDGAKEMAEQSASKFISMITKKATERCIRESRKILGAEDLLWAMMSLGYHNYFKSLSLYLERYRYSNGTRPMQLVCEIPKPILPPCEVFQQGLPPPPPPVALEANSSMNRNSSIEIAEEMNIDEFWDELSNLGDD 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05243 212 SUPERFAMILY Histone-fold 56 144 IPR009072 GO:0046982
Vivi3g05243 212 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 57 121 IPR003958 -
Vivi3g05243 212 MobiDBLite consensus disorder prediction 1 38 - -
Vivi3g05243 212 Gene3D Histone, subunit A 49 150 IPR009072 GO:0046982
Vivi3g05243 212 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Vivi3g05243 212 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Vivi3g05243 212 PRINTS CCAAT-binding transcription factor subunit A signature 123 141 - -
Vivi3g05243 212 MobiDBLite consensus disorder prediction 9 38 - -
Vivi3g05243 212 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 34 148 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05243 Vivi-Chr3 106091599 106092785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05243 48 175 CCAAT-HAP3 Transcription Factor Family AT1G21970 42.537 2.17e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi3g05243 CBFD_NFYB_HMF 8.9e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05243 K08065 - tpra:123912904 129.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05243 3 106091599 106092785 Vivi7g02568 7 89612320 89613196 PCT