Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05241 ATGTCTCAATCATTGTCTCAAACCACCACCCTCTTCTTCCTCCTCTTCCTCTTCCCAACCACACTCTCCCAAAACACAACCTTCACCTTCCCCTCTTTCACCCTCCGCAACATAACCCTCCTCGGCGACTCCTTCCTCCGCAACGGCGTCGTCGGACTCACCCGCTCCACCACCGTCCCCGCTTCCTCCTCCGGCACCCTCCTCTACAACAACCCCATTTCTCACACACCCAACTCCCCTTTCTCTTTCTCCACCAACTTCACTTTCTCCATCACCAACTCAAATCCAAACCCTCCCTCTTCCTCACCCAACCACCTCTCCTTCTTCCTCAACTCCTCCACCCCTTTCATCTCCCTCGATTTCCACACCAACAACAACCAAATCAGTCTCTTTTTCAACAATTCAGTCCAAGAAACCATCGACTTCAATCTCACAAACACAAACCTGATCACTTCTTGGATTGACTACAACACTTTCAACACAAACTTCACTGTTTTCTTAAGCTATGCAAATGAAAATTCGAGTTTTTCGAAACCCGAAAAACCTGTTTTGAATGTTGAGTTTAATCTCTCTGAGTATTTCAATGATATCGAGTTTCTCTATGTTGGGTTTCTGGGTTCTGCTTTAGGAAGTACCGAGCTTCAACAAATCATGAACTGGAGCTTTCAAACTTCTCAGTTTCCATCTCTTAATCAAACCCAAGATAAAAATTCAAGCTTTCACCATTTTGGTTATGAATATGAGGATGTTCCTGTTTCAAATTCAACAAAAAAGGGTCATGGAAAGAGATTTGTGATTGGTTTATGTGTTGCTATTGTGGGTCCATCTTTGTTCTTTGTGCTGTTTTTTGTTTTAGGGTATTTTTCTTATAGGAAATGGAGTAGTTTAAGGAAGGTTAACAAGAGTAAAAACTCTATAGGGTGTCCTACAGAGTTTGGTTACAAGGAGTTAAGGTTTGCTACAAAAGGGTTTCATGGTTCAAGGATAATTGGGAATGGTTCATTTGGGACTGTTTATAAGGCTTTGTTTGTTTCTTCGGGAACGGTTGCGGCTGTTAAAAGATCGAGACATTCACACGAAGGGAAGACCGAGTTTTTATCCGAGTTATCGATTATAGCTGGTTTGAGGCACAAGAATTTGGTTCAACTTTTAGGTTGGTGTGTTGAGAAAGGTGAGTTGTTGCTTGTTTATGAGTTTATGGAGAATGGGAGTTTAGATAAGTGGCTTTATAGAGAAGGTGTTGAGTGTGGTGTTTTGTTGAGTTGGGTTCAAAGGTTTAACATTGTTGTTGGTTTGGCTTCTGTTTTAGCTTATTTGCATCAAGAGTGTGAGCAGAGAGTGATTCATAGAGATATTAAGACAGCGAATATATTGTTAGACGGAAATTTGAATCCGCGGTTAGGTGATTTCGGGTTGGCGAAGCTTATGGATCATGATAAGAGTCCGGTTTCGACGTTAACGGCCGGAACAATGGGATACCTAGCTCCGGAGTATCTTCAATACGGGAAAGCGACCGATAAGACCGATGTTTTTAGCTTCGGGGTCGTTGTTCTTGAGGTTGCTTGCGGTAGAAGGCCGATTGACAAAGAGGGTCAAGAGATTGTGAACTTGGTTGATTTCGTTTGGGGACTTTACGCGAAAGGGAAGATTATTAACGCGGTTGATAAAAGATTGAACGGCGAGTTCGATGAGGTTGAAATGGAGAAGATGTTGATGTTAGGTTTGAGTTGTGCAAATCCAAATGGTGATGAAAGGCCTTCTATGAGGAGAGTTTTGCAGATTCTTAACAATGAAGGTGTGCCTCTTGTTGTGCCTAAAGTGAAACCTTGTCTTAGTTTCTCTTCTGGATTGTTGTTGACTCTTGATGAGATTGTTTCGGATTTTGATGAAAGGTTTTGTTCTAATCAATATAGTTGCAAGATTCAAATTGAACCAAGTTGTTGA 1944 0.4187 MSQSLSQTTTLFFLLFLFPTTLSQNTTFTFPSFTLRNITLLGDSFLRNGVVGLTRSTTVPASSSGTLLYNNPISHTPNSPFSFSTNFTFSITNSNPNPPSSSPNHLSFFLNSSTPFISLDFHTNNNQISLFFNNSVQETIDFNLTNTNLITSWIDYNTFNTNFTVFLSYANENSSFSKPEKPVLNVEFNLSEYFNDIEFLYVGFLGSALGSTELQQIMNWSFQTSQFPSLNQTQDKNSSFHHFGYEYEDVPVSNSTKKGHGKRFVIGLCVAIVGPSLFFVLFFVLGYFSYRKWSSLRKVNKSKNSIGCPTEFGYKELRFATKGFHGSRIIGNGSFGTVYKALFVSSGTVAAVKRSRHSHEGKTEFLSELSIIAGLRHKNLVQLLGWCVEKGELLLVYEFMENGSLDKWLYREGVECGVLLSWVQRFNIVVGLASVLAYLHQECEQRVIHRDIKTANILLDGNLNPRLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATDKTDVFSFGVVVLEVACGRRPIDKEGQEIVNLVDFVWGLYAKGKIINAVDKRLNGEFDEVEMEKMLMLGLSCANPNGDERPSMRRVLQILNNEGVPLVVPKVKPCLSFSSGLLLTLDEIVSDFDERFCSNQYSCKIQIEPSC 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05241 647 CDD STKc_IRAK 330 597 - -
Vivi3g05241 647 Pfam Legume lectin domain 26 133 IPR001220 GO:0030246
Vivi3g05241 647 Pfam Legume lectin domain 135 234 IPR001220 GO:0030246
Vivi3g05241 647 Pfam Protein kinase domain 325 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05241 647 SMART serkin_6 324 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05241 647 ProSiteProfiles Protein kinase domain profile. 324 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05241 647 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 228 IPR013320 -
Vivi3g05241 647 ProSitePatterns Protein kinases ATP-binding region signature. 330 353 IPR017441 GO:0005524
Vivi3g05241 647 SUPERFAMILY Protein kinase-like (PK-like) 308 620 IPR011009 -
Vivi3g05241 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Vivi3g05241 647 Gene3D Phosphorylase Kinase; domain 1 289 399 - -
Vivi3g05241 647 Gene3D - 23 226 - -
Vivi3g05241 647 PANTHER - 49 598 - -
Vivi3g05241 647 Gene3D Transferase(Phosphotransferase) domain 1 400 600 - -
Vivi3g05241 647 FunFam L-type lectin-domain containing receptor kinase VIII.1 400 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05241 Vivi-Chr3 105955464 105957716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05241 5 630 Receptor kinase-like Gene Family AT5G55830 53.461 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vivi3g05241 Pkinase 2.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05241 - - gmx:100808744 704.131