Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05223 ATGGGTGGTGCTAAGTCAGCTGTTGATTTAATGGAATCTTCATCTGAAGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAGAAGCTAGCATAGAACAACCAACAACATCGGAAACTGACATGTACAATCAACCTTTCGTCATAGGTGTTGCCGGGGGTGCGGCATCTGGCAAAAAAACAGTTTGTGATATGATTGTTCAGCAGCTTCATGACCAGCGTGTTGTGCTTGTTAATCAGGATTCGTTTTACAATAACTTGAGCGAGGAGGAACGATCAAGGGTACAAGATTATAACTTTGACCATCCTGATGCTTTTGATACCGAGGAATTGCTTCGTGTTATGGACAAATTGAAGCATGGTGAAGCTGTAGATATTCCAAAGTATAATTTTAAGAGCTACAAAAGTGACACATTAAGAAGGGTGAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGATCCACGTGTTAGGGAGTTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTTCGTTTGGCAAGAAGGATTAGGCGTGATACCAGCGAGAAAGATCGGGACATTGGAGTAATTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATCATACCTCGTGGAGGAGATAATCATGTGGCTATTGATTTGATTGTTCAGCATATCCGCACGAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCGAATTTATATGTAATTCAGTCGACTTTTCAGATTCGAGGTATGCATACCCTGATACGCGATGCTCAGATAACGAAGCATGATTTTGTATTTTATTCTGATCGTTTGATTCGTTTGGTTGTGGAACATGGTTTAGGACATCTTCCATTTACAGAAAAACAAGTAATCACTCCCACAGGTTCTGTATACACTGGTGTAGATTTTTGCAAAAGGTTGTGTGGTGTTTCTGTCATCAGAAGTGGGGAGAGTATGGAGAATGCCTTAAGAGCATGCTGTAAAGGTATTAAGATTGGGAAAATTCTGATCCACAGAGAAGGCGACAATGGTGAACAGCTAATATATGAAAAATTGCCAAATGACATCTCAGAAAGGCATGTGTTACTGTTGGATCCTATTCTCGGCACAGGTAATTCGGCTGTTCATGCAATTTCTTTACTTATACGAAAAGGTGTACCAGAGTCCAACATTATATTTCTTAATCTCATTTCTGCTCCCAAAGGTGTTCATGTGGTCTGCAAAAGTTTTCCAAGAATTAAAATAGTGACATCTGAGATAGAGATTGGCTTGAATGAAGATTACCGTGTCATACCGGGCATGGGCGAGTTTGGAGATCGGTATTTTGGAACAGATGATGATGATGAACAAGTGGTGGCTGCTTCACAGAAGTGA 1437 0.3953 MGGAKSAVDLMESSSEVHFSGFHMDGFEQREASIEQPTTSETDMYNQPFVIGVAGGAASGKKTVCDMIVQQLHDQRVVLVNQDSFYNNLSEEERSRVQDYNFDHPDAFDTEELLRVMDKLKHGEAVDIPKYNFKSYKSDTLRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTSEKDRDIGVILDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAQITKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGEQLIYEKLPNDISERHVLLLDPILGTGNSAVHAISLLIRKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDYRVIPGMGEFGDRYFGTDDDDEQVVAASQK 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05223 478 PRINTS Uridine kinase signature 78 89 - -
Vivi3g05223 478 PRINTS Uridine kinase signature 123 138 - -
Vivi3g05223 478 PRINTS Uridine kinase signature 178 188 - -
Vivi3g05223 478 PRINTS Uridine kinase signature 214 227 - -
Vivi3g05223 478 PRINTS Uridine kinase signature 48 65 - -
Vivi3g05223 478 PRINTS Uridine kinase signature 192 203 - -
Vivi3g05223 478 CDD PRTases_typeI 323 438 IPR000836 -
Vivi3g05223 478 FunFam Uridine kinase 45 249 - -
Vivi3g05223 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 239 IPR027417 -
Vivi3g05223 478 Gene3D - 45 249 IPR027417 -
Vivi3g05223 478 NCBIfam uridine kinase 47 246 IPR000764 -
Vivi3g05223 478 Gene3D - 250 465 IPR029057 -
Vivi3g05223 478 CDD UMPK 50 246 IPR000764 -
Vivi3g05223 478 FunFam Uridine kinase 250 465 - -
Vivi3g05223 478 Pfam Phosphoribulokinase / Uridine kinase family 50 234 IPR006083 GO:0005524|GO:0016301
Vivi3g05223 478 SUPERFAMILY PRTase-like 249 466 IPR029057 -
Vivi3g05223 478 PANTHER URIDINE KINASE 33 375 - -
Vivi3g05223 478 Pfam Uracil phosphoribosyltransferase 264 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05223 Vivi-Chr3 105117615 105123843 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05223 3 468 PRT Gene Family AT4G26510 82.479 0.0 809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05223 K00876 - gmx:100527893 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05223 3 105117615 105123843 Vivi7g02516 7 89097441 89104243 PCT