Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05218 ATGAAAAACACCGACCATTATGATTCGTACGACTATCGATGCCGTGACAGTGGTACATCTGATTCTGAATCCGACAATGGTCGGGATGACAGTAATTCGGTGTCCAGTGCGTACCAAGGTTCAAGTGATGGTGATGGCGATGGCGATGGTGATAGTCACGGTGAAAAATTTGTTGAATTTGATGCAGTTGTAGGTGATAGAACAGTGAAAATTAATGCCCTTACTGCTGATGAAATTCGTGCTATGGAATTCGGTACAGTTGATGAAGCTAATGTGTTTTATTTCAAGTATGCTAAATGTAAAGGGTTTGCCATTAGGAAAAGTGATGTTAGGACAAGATCGACTGAGGATGGACAAACAATTATAATGAGGCAGTTTGTATGCAATAAACACGGTCTAAGAGATACAAAACACTTAAGGAGGCTTGATAGAAAAAGAGAACACAGACCTACGACCCGCACTAATTGTCCCGCTAGGCTTCGTGTGCATTACAACCCCCAGAAGGATATTTATGTAGTGACATGTTTTGAAGAGGCTCACAACCATGAATTAACACCATCTAGGTTTGTCCACTTACACCCCATTTATCGTGAGATTACTGCAGCAGATAGAGCTCAAATTGACGGTCTACAGTCAAATGGAATTAGAACTTGTCATATAATGGGGTACATGGTTGCTCAGAAGGGTGGACACGATCGTGTTGGGTTTACAAAGAAGGATCTGTACAATTATTTTGATAGTAAAATGCGTGCTAATATTAAAGATGGTGACGTTGCCGCTGCTATAAATTATCTAACTGTGAAGTCATCTACTGATCCCATGTTATATGGTAAATATGCCGTAGACATGGATGGACGAATGAAGTCTCTTTTTTGGGCTGATGGAAGCAGTAGATCTGACTATTTTTGTTTTGGCGATGTGATTGCGTTCGACACGACTTACAAGAAGAACAAATACAACTACCCATTGGTTATATTTTCAGGGTGTAACCACCACTCTCAGACAGTTATTTTTGGTGCTGCGTTGGTGTCAGATGAAACGACAGAGACGTATAAGTGGTTGTTGGAGTGTTTTTTAGAGTGCATGGAAAATAGATACCCAGCAGCAGTTGTAACAGACGGAGATGGGGCGATGAGGGAATCTATAAAACAGGTGTTTCCGGATGCGACACATCGTTTATGCGCTTGGCATTTGAACAAGAATGCGTCTGAGAATGTAAAGAACTCGGCATTTTTGAAAGATTTTCAAAAAGCCATGTACTCTAATTTTACAAAGGATCAATTTGAAGAGTTTTGGTCAAAAATAATTAAAGAAAACGGACTTGAAGGAAATCCTTGGGTTGCAAAAACGTACGAGAACAGGTCACTATGGGCAACTGCATATCTACGTGAGAAGTTTTTTGGACGTATAAGAACTACGTCTCAATGTGAAGCCGTCAATGCAGTCATCAAGAGTTATGTCAGGAAGAAAGGCTGCATTTTTGAATTTATGCACAATTTTGATCAGGCTATGAGATCTTATAGAAACAATGAACTGATTGCCGATTATAAATCAAAGTTTTCAGAACCTGTGATGACTACTCAACTGCGTGCCCTTGAGAGCCATGCTGCGAATGTTTATACTATGGAGATTTTCAAGGAAGTCAGAGATGAAATAGTGAAGGCTGGATCATTGATTGTTAAGGAAAAGTTAATTCGCAACGGATTTAAGACTTATCGATTTACAAAATATTGTTGTGATAACTATGACGTAGAGGTTGTGTATGATGGTGAAACACTTCAATGTGAGTGTAGGTTATGGGATTCTCATGGGATTCCATGTTCTCATATGTTTGGTGTCATGAAGGAAGAACATGTTAGTCTCATTCCCACCGGTTTGATTTTGTCGAGATGGACGAAGGATGCAAAAATTCAGTACTTGAACGTGAATTGTAATGGTTCTGATGATTCTAAAATGATTGAGCTAGCTCGGTTTGGTGCATATTGTTCTGCATTTACTGCCTTTTGCAATGAAGCTTCAAAAAGGGAAGGTGTTTATGGGGAAATAATGGGTGACATTCTGAAGTTACACAAAAAGTATTGCAGTACGGACGATCCTATTTTGGCATCGAACTCAGTTGTAGGTGATCCAAATATTGTGAATAGCAAAGGTGCTCCAAAGAAAAGAAAGAATGACATAAAATCTATTAGGCGATGTTCTAAATGCAACAGTAGAACTCATAATGCAAGGAGTTGTTCGGTTGCGGAAAACGCGCCAACTGAACAAAATGTTGGTATGACGTCGCGGCCAGTAACTGATTCATTCAGCCAGGTTGTGAAGAACAAGAATGGAAAAAGAGGTCGCATTGGTGGAAGTAGTGTGCAAAATAAATGTACAGAACCACCGAACTCTCGTGGCGCGAATGTGACAGCGACTTCTCGTGCGGAAGTTGGAAGCACAAGCATACCCATGCCTGCAATGTATGGATTGCAACCCGTGTTGCCAGCGGTACAACCGATGTTGCATCCAATGCATGTACAACCGTTAATCCCACTATATCCAACGACAGTTGCGGAAAATTCGGGTTCGTGTTTCGGTAGGCCACAACGACTGATGAACAATGGTGGTACTTGA 2613 0.4068 MKNTDHYDSYDYRCRDSGTSDSESDNGRDDSNSVSSAYQGSSDGDGDGDGDSHGEKFVEFDAVVGDRTVKINALTADEIRAMEFGTVDEANVFYFKYAKCKGFAIRKSDVRTRSTEDGQTIIMRQFVCNKHGLRDTKHLRRLDRKREHRPTTRTNCPARLRVHYNPQKDIYVVTCFEEAHNHELTPSRFVHLHPIYREITAADRAQIDGLQSNGIRTCHIMGYMVAQKGGHDRVGFTKKDLYNYFDSKMRANIKDGDVAAAINYLTVKSSTDPMLYGKYAVDMDGRMKSLFWADGSSRSDYFCFGDVIAFDTTYKKNKYNYPLVIFSGCNHHSQTVIFGAALVSDETTETYKWLLECFLECMENRYPAAVVTDGDGAMRESIKQVFPDATHRLCAWHLNKNASENVKNSAFLKDFQKAMYSNFTKDQFEEFWSKIIKENGLEGNPWVAKTYENRSLWATAYLREKFFGRIRTTSQCEAVNAVIKSYVRKKGCIFEFMHNFDQAMRSYRNNELIADYKSKFSEPVMTTQLRALESHAANVYTMEIFKEVRDEIVKAGSLIVKEKLIRNGFKTYRFTKYCCDNYDVEVVYDGETLQCECRLWDSHGIPCSHMFGVMKEEHVSLIPTGLILSRWTKDAKIQYLNVNCNGSDDSKMIELARFGAYCSAFTAFCNEASKREGVYGEIMGDILKLHKKYCSTDDPILASNSVVGDPNIVNSKGAPKKRKNDIKSIRRCSKCNSRTHNARSCSVAENAPTEQNVGMTSRPVTDSFSQVVKNKNGKRGRIGGSSVQNKCTEPPNSRGANVTATSRAEVGSTSIPMPAMYGLQPVLPAVQPMLHPMHVQPLIPLYPTTVAENSGSCFGRPQRLMNNGGT 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05218 870 MobiDBLite consensus disorder prediction 781 807 - -
Vivi3g05218 870 MobiDBLite consensus disorder prediction 1 52 - -
Vivi3g05218 870 Pfam FAR1 DNA-binding domain 93 185 IPR004330 -
Vivi3g05218 870 MobiDBLite consensus disorder prediction 774 807 - -
Vivi3g05218 870 PANTHER OS01G0519700 PROTEIN 79 778 - -
Vivi3g05218 870 MobiDBLite consensus disorder prediction 1 28 - -
Vivi3g05218 870 Pfam MULE transposase domain 307 401 IPR018289 -
Vivi3g05218 870 ProSiteProfiles Zinc finger SWIM-type profile. 582 618 IPR007527 GO:0008270
Vivi3g05218 870 SMART 26again6 593 620 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05218 Vivi-Chr3 104981664 104985306 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi3g05218 MULE 1e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05218 - - vvo:131620026 1480.69