Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05216 ATGGCTAGAAAAAAGGTGAAGCTCGCTTTCATTGAGAATGATACCGCAAGGAAATCAACATACAAGAATCGAGAGAAGGGTTTAGTGAAGAAGATTGATGAACTAGCAACCCTTTGCGGTGTAGAGGCTTGTGCCATAATATATGGCCCCTACGAACCACAACCTGAGATCTGGCCATCGGCGTCTGGAGTACAAAATGTGCTTTCGAAATTCATGACAAAGTCTGAGTTCGAACAAAGAAAAAAGATGGTGAATCAGGAGAGTTTTCTGAAAGAAAGGATTTCGAAGGCTGAAAAGCAATTTGAAAAGCAATGGAAAGACAACAGAGAGAAAGAGAGAACCATGTTCTTGTTTGAATGTCTCAGTGCTGGGAACGTGGTGCAGAAGGATATGTCGGTGGCTGGTTTGAATCATCTTGCTTGGATGATTGATCAGAATCTTAAGGAGATTGGCAGAAGGATTGAAGCAGATGATAGAAACAGTAATATTCATCAAAGTGAAAATCAAATCCAAATGGAACAGTCACTGCTGCTACCATTGGCGCTGCCACCACCAACCATGTCCAATAATGAAGACATTGCAATGATGAGTCATGGCCATCTTCCACCACCACCGCCACCACAACCAACCGCGCCGAATAATGATGAAATTGCAATGAATAATAATGACATCATGATGAATGCAAATCTGTTGAATAGATTTTGA 705 0.4156 MARKKVKLAFIENDTARKSTYKNREKGLVKKIDELATLCGVEACAIIYGPYEPQPEIWPSASGVQNVLSKFMTKSEFEQRKKMVNQESFLKERISKAEKQFEKQWKDNREKERTMFLFECLSAGNVVQKDMSVAGLNHLAWMIDQNLKEIGRRIEADDRNSNIHQSENQIQMEQSLLLPLALPPPTMSNNEDIAMMSHGHLPPPPPPQPTAPNNDEIAMNNNDIMMNANLLNRF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05216 234 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi3g05216 234 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi3g05216 234 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Vivi3g05216 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi3g05216 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi3g05216 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 172 - -
Vivi3g05216 234 Coils Coil 80 100 - -
Vivi3g05216 234 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vivi3g05216 234 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi3g05216 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vivi3g05216 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05216 Vivi-Chr3 104967585 104968392 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05216 1 155 Type I MADS-box Gene Family AT5G48670 56.129 2.09e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g05216 SRF-TF 2.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05216 - - vvo:131658560 281.567