Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05214 ATGGCTAGAAAAAAGGTGAAGATTGCTTTCATTGAGAATGATACCGCAAGGAAATCAACATACAAAAATCGAGAGAAGGGTATAGTGAAGAAGGTTGATGAACTAGCAACCCTTTGCGGTGTAGAGGCTTGTGCCATAATATATGGCCCCTACGAACCACAACCTGAGATCTGGCCATCGGCGTCTGGAGTACAAAATGTGCTTTCGAAATTCATGACAAAGTCTGAGTTCGAACAAAGAAAAAAGATGAAGGATATGTCAGTGGCTGGTTTGAATCATCTTGTTTGGATGATTGATCAGAATCTTAAGGGGATTAGCAGAAGGATTGAAGCAAATGATAGAAACAGTAATATTCATCAAAGTGAAAATCAAATCCAAATGGAACAGTCACTGCTGCTACCATTGGCGCTGCCACCACCAACCACGTCCAATAATGAAGACATTGCAATGATGAGTCATGGCCATCTTCCACCACCACCGCCACCACAACCAACCGCGCCGAATAATGATTAA 513 0.423 MARKKVKIAFIENDTARKSTYKNREKGIVKKVDELATLCGVEACAIIYGPYEPQPEIWPSASGVQNVLSKFMTKSEFEQRKKMKDMSVAGLNHLVWMIDQNLKGISRRIEANDRNSNIHQSENQIQMEQSLLLPLALPPPTTSNNEDIAMMSHGHLPPPPPPQPTAPNND 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05214 170 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Vivi3g05214 170 MobiDBLite consensus disorder prediction 137 170 - -
Vivi3g05214 170 FunFam Agamous-like MADS-box protein AGL80 13 89 - -
Vivi3g05214 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vivi3g05214 170 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi3g05214 170 MobiDBLite consensus disorder prediction 154 170 - -
Vivi3g05214 170 PANTHER MADS BOX PROTEIN 3 109 - -
Vivi3g05214 170 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi3g05214 170 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi3g05214 170 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi3g05214 170 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi3g05214 170 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05214 Vivi-Chr3 104953421 104954068 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05214 1 110 Type I MADS-box Gene Family AT5G48670 42.208 5.91e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi3g05214 SRF-TF 2.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05214 - - vvo:131658721 309.301