Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05210 ATGAGTGATTCTCTCTACAAAGTTGATACAACTCCACGTCTTGCTCAATGGAGAATCGAAAACTTGGCTTCTTGCACTTATCGCAAATCAGATCCTTTCAAAATTGGAAACTGGAACTGGTATTTGTCGGTGGAGAAACATAAGGTTGTGTTTGTTAAACTGTTTCCTGAAATATCAAATGTCACAAGAGACAATCCTCCAATTGCATCTTTTATTATGCGTGTGGTGAGTTCTGCTCTTGGAGATCGCAAAGCTCTCACACATCCAGAGATAAAGGACAAAGTGATCAAGAGCAACGAGGATTTTGTTTGGTCACTTGAGGTTCCACTGTCTGGAAAATTCATCATTGATGTTGATTTCCTTGATTTGAAGATTGCATCCCCAGATGGCGGAGAGCCTTGCTCGATATGGGGTGGTGAAGGATTTACTCAAGAAAGATCGAATGCAAAAGCGCTAGGGTCGCTTGGTAAAATGCTGCGAAAAGGAATCCACACGGACATAACCATCAATGCTTCTGATGGAAGTATAGGAGTTCATAGAGCTGTTCTTGCTTCTCGGTCACCCGTCTTCCAAAGCATGTTCTCGCACGATCTTAAAGAGAAAGAGCTGTCGACCATAAACATCACAGACATGTCAATCGAAACATGTCAGGCTTTTTTCAACTATCTTTACGGGATCATAAAAAACGAAGAATTTCTTACTCATAGGCTGGCCCTTCTACACGCAGCAGACAAGTACGACATATCTGATTTGAGAGAGGCCATTCACGAGAGTCTTCTTGAAGATATTGATACGAAGAATGTACTCGAGAGGCTCCAAAACGCGTCACTATACCGATTGACGAAACTGAAGATGAGCTGTATTCAGTATCTCGTTAAATTTGGTAAAATATTCGAAATTCGGGGTGATTTCAATACCTTCCTCCAAAATGCAGACAGGGATCTCATTTCTGAAGTCTTCGCGGAAGTTCTCGGAGCCTGGAAAGGATATTGA 993 0.4189 MSDSLYKVDTTPRLAQWRIENLASCTYRKSDPFKIGNWNWYLSVEKHKVVFVKLFPEISNVTRDNPPIASFIMRVVSSALGDRKALTHPEIKDKVIKSNEDFVWSLEVPLSGKFIIDVDFLDLKIASPDGGEPCSIWGGEGFTQERSNAKALGSLGKMLRKGIHTDITINASDGSIGVHRAVLASRSPVFQSMFSHDLKEKELSTINITDMSIETCQAFFNYLYGIIKNEEFLTHRLALLHAADKYDISDLREAIHESLLEDIDTKNVLERLQNASLYRLTKLKMSCIQYLVKFGKIFEIRGDFNTFLQNADRDLISEVFAEVLGAWKGY 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05210 330 ProSiteProfiles BTB domain profile. 165 224 IPR000210 GO:0005515
Vivi3g05210 330 SUPERFAMILY POZ domain 150 261 IPR011333 -
Vivi3g05210 330 Gene3D Potassium Channel Kv1.1; Chain A 143 293 IPR011333 -
Vivi3g05210 330 SMART BTB_4 165 263 IPR000210 GO:0005515
Vivi3g05210 330 CDD BTB_POZ_ZBTB_KLHL-like 164 246 - -
Vivi3g05210 330 Pfam BTB/POZ domain 157 261 IPR000210 GO:0005515
Vivi3g05210 330 PANTHER OS08G0495500 PROTEIN-RELATED 6 329 IPR044714 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05210 Vivi-Chr3 104865196 104866885 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vivi3g05210 BTB 6.9e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05210 K10523 - gmx:100790186 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05210 3 104865196 104866885 Vivi3g05210 3 104865196 104866885 ECH
Vivi3g05210 3 104865196 104866885 Vivi7g01429 7 69988540 69992547 PCT