Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05200 ATGATGGCAACGCTTGGTTTCGCTGTCGCTGGTCTCTCCGGTGTTCGTCCTCTCCGATTCACCGATGAATGTTCTACCTCCGCTAGATTCATCCAGAAACCGACTTCCAATCACTCAAATCGCCGCAGGGTTTCAATCCAAGCCGTAGCGGCGGTAGTCGAGTCACGGCGGCCGGCGAAGAGTCTGTACGAAGTTCTCCGACTGAAGCCGGGAGCATCACCTACGGACATCAAATCGGCTTACCGAAGTCTAGCAAAGGTTTACCATCCCGACACGGCGGCGCGAAGGTTGCCGGAGTGTGACGACGGTGACTTCATCGAGATCCGCAACGCTTACGAGACGCTTTATGATCCGTCGACGAGAGCGGTTTACGATATGTCGCTGATGGCAGTGCACGGCGGAAGGAGCCGGCAGTTTTCGGCTCCGGTGACACAGAAACGGTATTCTGGATATTATACAAATAGAAGATGGGAAACGGATCAATGCTGGTAG 492 0.5427 MMATLGFAVAGLSGVRPLRFTDECSTSARFIQKPTSNHSNRRRVSIQAVAAVVESRRPAKSLYEVLRLKPGASPTDIKSAYRSLAKVYHPDTAARRLPECDDGDFIEIRNAYETLYDPSTRAVYDMSLMAVHGGRSRQFSAPVTQKRYSGYYTNRRWETDQCW 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05200 163 Gene3D DnaJ domain 48 149 IPR036869 -
Vivi3g05200 163 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 25 163 - -
Vivi3g05200 163 ProSiteProfiles dnaJ domain profile. 61 128 IPR001623 -
Vivi3g05200 163 ProSitePatterns Nt-dnaJ domain signature. 105 124 IPR018253 -
Vivi3g05200 163 SUPERFAMILY Chaperone J-domain 58 134 IPR036869 -
Vivi3g05200 163 SMART dnaj_3 60 120 IPR001623 -
Vivi3g05200 163 Pfam DnaJ domain 62 125 IPR001623 -
Vivi3g05200 163 PRINTS DnaJ domain signature 81 96 IPR001623 -
Vivi3g05200 163 PRINTS DnaJ domain signature 63 81 IPR001623 -
Vivi3g05200 163 PRINTS DnaJ domain signature 100 120 IPR001623 -
Vivi3g05200 163 CDD DnaJ 63 117 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05200 Vivi-Chr3 104310251 104311025 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05200 55 125 C2H2 Transcription Factor Family AT1G74250 43.243 3.14e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05200 - - tpra:123912861 257.684