Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05199 ATGGCTAGAACAAATTCCACCCTCCCCATCCGTTTCTTCAAAATTATTCTTCAAACCAATCTTCATACTATTAAAATACCAAATAAATTTATAAGGAGTCACAGTGCCGGTCTACCAAATCCAGTGATGATCAAACCTCCTGATGGCACAAAATGGAAAGTGTTTTGGAAAAACATTAATGGTGAGATTTGGTTTCAAAAAGGTTGGAAACTTTTTACTCAAAATTACTCTCTACAACATGGTTGTTTGGTAGTGTTTAAATATAAAGAAGGAACTTCAGAGTTAGATGTAGTGATACTTGGCCAGAATGGAGTAGAAATTGATTATGATTCTTCATATAACACTTTTGATGATGAAAATGAAAACCTTGACGATAGTGATGATGAATCAGTTAAGATTTTGAATGAACGGCCTAGTCAGAAGAAGGCTAGACAGAGATCACCTTCGGTATCTCCTAGACCGCATAAGAAAGTTAAAGGTGGGATTGAGAAGAATAGTCAAAGAACTACATCCTTGAATATTCCAAAGGAAACTAGTGCTCGGGAAGTTGCCGAAGAATTTATCTCAACCAATCCCTTTTTCACAATTTTGATCAAGCCTTATAATCTGGTAGCAAGCGGGTTGGGTTGGTTGAACTTAAAAGGAATTATTGAGAGTAAGGAGGAGTATGTGATGCTGCAGATTGGTGAAAGATCATGGAATCTGAAATTGCTCACTTATTACAGAAATAAAACTAGGCGTCGCTTTTCTGCTGGTTGGTCTAAGTTTGCAAAGGAAAGTGGACTGCAACCCGGAAATGTTTAG 804 0.3706 MARTNSTLPIRFFKIILQTNLHTIKIPNKFIRSHSAGLPNPVMIKPPDGTKWKVFWKNINGEIWFQKGWKLFTQNYSLQHGCLVVFKYKEGTSELDVVILGQNGVEIDYDSSYNTFDDENENLDDSDDESVKILNERPSQKKARQRSPSVSPRPHKKVKGGIEKNSQRTTSLNIPKETSAREVAEEFISTNPFFTILIKPYNLVASGLGWLNLKGIIESKEEYVMLQIGERSWNLKLLTYYRNKTRRRFSAGWSKFAKESGLQPGNV 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05199 267 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
Vivi3g05199 267 ProSiteProfiles B3 DNA-binding domain profile. 9 103 IPR003340 GO:0003677
Vivi3g05199 267 SUPERFAMILY DNA-binding pseudobarrel domain 189 266 IPR015300 -
Vivi3g05199 267 CDD B3_DNA 11 100 IPR003340 GO:0003677
Vivi3g05199 267 Pfam B3 DNA binding domain 19 97 IPR003340 GO:0003677
Vivi3g05199 267 Gene3D - 6 104 IPR015300 -
Vivi3g05199 267 ProSiteProfiles B3 DNA-binding domain profile. 231 267 IPR003340 GO:0003677
Vivi3g05199 267 MobiDBLite consensus disorder prediction 135 171 - -
Vivi3g05199 267 Gene3D - 171 267 IPR015300 -
Vivi3g05199 267 PANTHER B3 DOMAIN-CONTAINING 10 267 - -
Vivi3g05199 267 SMART B3_2 12 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05199 Vivi-Chr3 104224132 104225341 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05199 12 267 B3 DNA Binding Superfamily AT3G18990 25.000 3.92e-24 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi3g05199 B3 3.8e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05199 - - vvo:131658711 370.933