Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05198 ATGGCTAGGGCAAATTCCACCATTCCCATCTGTTTCTTCAAGATTATTCTTCAAACCAATCTTCAAACTATTAAAATACCAAATAAGTTTACAAGGAGTCACGGAACTGGTCTCCCAAATCCAGTGATGATCAAACCTCCTGATGGCACTAAATGGAAAGTATTTTGGAAAAACATCAATGGTGAGATTTGGTTTCAAAAGGGTTGGAATATTTTCACTCAAAATTACTCTCTACAACATGGTTGTTTTGTAGTTTTTAAATATAAAGAAGGAAGTTCAGAGTTAGATGTAATCATACTTGGCCAGCATGCAGTAGAAATTGACTATGATTCACCACATGACAGTTCTGATGATGAAGATGAAAACCATGACCATAGTGATGATGAATCAGTTGAGATTTTGAATGAATTGCATAATCAGAAGAAGCCTAGAGAGAGTAAAACATTTGCTTCTCCTAGAGCACATAAAAAAGTGAGAGGTGAGATTGAGAAAAATAGTCAAAGAACTACATCATTGAATAGGCCAAGGGAATATAGAGCTCGGGAAGTTGCCGAAGAATTTATCTCACGCAATCCCTTTTTCACAATTTCGATCAAGCTTGCTAATCTGGTAGCAAATGTGCTGACTGTACCACTTTTAAAAGGGGTTATTGAGAACCAGAATACGAATGTGATGCTGCAGATTGGTGAAAGATCATGGAATCTGAAATTGCTTCGATGTTACAATGATAGAGCTAAGCGTCGCTTTTCGGCTGGTTGGTGCGCGTTTGCCAAGGAAAGTGGAGTGCAAGCAGCAGATGTTTGTGTGTTTGAACTGATAAACAAGAAAAATTTAGTTTTTAAAGTTCATGTTTTTTAA 858 0.3695 MARANSTIPICFFKIILQTNLQTIKIPNKFTRSHGTGLPNPVMIKPPDGTKWKVFWKNINGEIWFQKGWNIFTQNYSLQHGCFVVFKYKEGSSELDVIILGQHAVEIDYDSPHDSSDDEDENHDHSDDESVEILNELHNQKKPRESKTFASPRAHKKVRGEIEKNSQRTTSLNRPREYRAREVAEEFISRNPFFTISIKLANLVANVLTVPLLKGVIENQNTNVMLQIGERSWNLKLLRCYNDRAKRRFSAGWCAFAKESGVQAADVCVFELINKKNLVFKVHVF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05198 285 SUPERFAMILY DNA-binding pseudobarrel domain 189 285 IPR015300 -
Vivi3g05198 285 MobiDBLite consensus disorder prediction 109 128 - -
Vivi3g05198 285 Gene3D - 174 285 IPR015300 -
Vivi3g05198 285 ProSiteProfiles B3 DNA-binding domain profile. 9 103 IPR003340 GO:0003677
Vivi3g05198 285 PANTHER B3 DOMAIN-CONTAINING 10 284 - -
Vivi3g05198 285 ProSiteProfiles B3 DNA-binding domain profile. 231 285 IPR003340 GO:0003677
Vivi3g05198 285 Pfam B3 DNA binding domain 218 284 IPR003340 GO:0003677
Vivi3g05198 285 Pfam B3 DNA binding domain 20 94 IPR003340 GO:0003677
Vivi3g05198 285 MobiDBLite consensus disorder prediction 137 164 - -
Vivi3g05198 285 CDD B3_DNA 11 100 IPR003340 GO:0003677
Vivi3g05198 285 Gene3D - 7 104 IPR015300 -
Vivi3g05198 285 CDD B3_DNA 224 285 IPR003340 GO:0003677
Vivi3g05198 285 SUPERFAMILY DNA-binding pseudobarrel domain 10 110 IPR015300 -
Vivi3g05198 285 SMART B3_2 12 103 IPR003340 GO:0003677
Vivi3g05198 285 SMART B3_2 193 283 IPR003340 GO:0003677
Vivi3g05198 285 MobiDBLite consensus disorder prediction 137 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05198 Vivi-Chr3 104115319 104116622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05198 8 285 B3 DNA Binding Superfamily AT3G18990 26.087 1.28e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi3g05198 B3 2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05198 - - vvo:131658711 468.388