Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05197 ATGGCTAGAGGAAATTCCACTCTCCCCATCTGTTTCTTCAAGATTATCCTCCAAACTAATCTTCAAACAATTAAAATACCGAATAAGTTTACAAGGAGTCATGGTGTTGGTCTACCTAACCCAATGTTCATCAAGCCTCCTGATGGCACAAAATGGAAAGTGTTTTGGAAAAACATTAATGGGGAGATTTGGTTTCAAAAAGGTTGGAAAATATTTACTCAAAATTACTCTCTACAACATGGTTGTTTGGTAGTGTTTAAATATAAAGAAGGAAGTTCAGAGTTAGATGTAATCATACTTGGCCAGCATGCAGTAGAAATTGACTATGATTCATCACGTGACACTTCTAATGATGAAGATGAAAACCTTGACCATAGGGACGATGAACCAGTTGAGACTTTGAATGTTGATGATAGTGATGATGAATCAATTGAAATTCTGAATGAATGGCATAAGGAGAAGAAGCCTAGACAGAAGTCACCATTAGCTTCTCCTAGGCCACATAAAAAAGTGAGAGGTGATATTGAGAAGAATAGTCAAAGAAGTACATCATTGAACAAGCCAAAGGAATATAGAGCTCGGGAAGTTGCTGAAGAATTTATCTCAAACAATCCTTTTTTCATAATTTCGATCAAGCCTGCTAATCTGGTAGCAAATGTGCTGATTGTACCAAATTTAAAAGGGGCTATTGAGAACGAGAATACGAATGTGATGGTGCAGATTGGTGAAAGATCATGGAATCTGAAATTGCTCCGTTCTTACAGTGATAGAGATAAGCGTCGCTTTTCGGCTGGTTGGTCAATGTTTGCAAAGGAAAGTGGACTGCAACCGGGAGATGTGTGCGTGTTTGAACTGATGAACAAGGAAGATTTAGTTTTTAAAGTTCATGTTTTTAAAAGGACTGTTAATGTGTCTTTATCTGTTTAA 927 0.3711 MARGNSTLPICFFKIILQTNLQTIKIPNKFTRSHGVGLPNPMFIKPPDGTKWKVFWKNINGEIWFQKGWKIFTQNYSLQHGCLVVFKYKEGSSELDVIILGQHAVEIDYDSSRDTSNDEDENLDHRDDEPVETLNVDDSDDESIEILNEWHKEKKPRQKSPLASPRPHKKVRGDIEKNSQRSTSLNKPKEYRAREVAEEFISNNPFFIISIKPANLVANVLIVPNLKGAIENENTNVMVQIGERSWNLKLLRSYSDRDKRRFSAGWSMFAKESGLQPGDVCVFELMNKEDLVFKVHVFKRTVNVSLSV 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05197 308 SUPERFAMILY DNA-binding pseudobarrel domain 202 300 IPR015300 -
Vivi3g05197 308 ProSiteProfiles B3 DNA-binding domain profile. 9 103 IPR003340 GO:0003677
Vivi3g05197 308 Gene3D - 185 301 IPR015300 -
Vivi3g05197 308 Gene3D - 8 104 IPR015300 -
Vivi3g05197 308 SUPERFAMILY DNA-binding pseudobarrel domain 10 110 IPR015300 -
Vivi3g05197 308 Pfam B3 DNA binding domain 20 94 IPR003340 GO:0003677
Vivi3g05197 308 Pfam B3 DNA binding domain 232 300 IPR003340 GO:0003677
Vivi3g05197 308 ProSiteProfiles B3 DNA-binding domain profile. 206 301 IPR003340 GO:0003677
Vivi3g05197 308 CDD B3_DNA 11 100 IPR003340 GO:0003677
Vivi3g05197 308 CDD B3_DNA 237 299 IPR003340 GO:0003677
Vivi3g05197 308 SMART B3_2 12 103 IPR003340 GO:0003677
Vivi3g05197 308 SMART B3_2 206 301 IPR003340 GO:0003677
Vivi3g05197 308 MobiDBLite consensus disorder prediction 110 189 - -
Vivi3g05197 308 PANTHER B3 DOMAIN-CONTAINING 10 296 - -
Vivi3g05197 308 MobiDBLite consensus disorder prediction 145 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05197 Vivi-Chr3 104104795 104106193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05197 8 299 B3 DNA Binding Superfamily AT3G18990 27.059 1.24e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi3g05197 B3 5.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05197 - - vvo:131658711 499.204