Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05194 ATGGCTCCTAGAGCAAATTCCACCATCCCCGTCTATTTCTTCATGATTATTCTTCAAACCAATCTTCAAACTATAGTAACCATTCCTTTTAACTTGCTGCTACCGTCTCCTACTTTTGTTATATCTAAAATACCAAGTAAGTTTACAAGGAGTCACGGAGCTGGTCTCCCAAATCCAGTGTTGATCAAGCCTCCTGATGGCACTAAATGGAAAGTGTTTTGGAAAAATATCAATGGTGAGATTTGGTTTCAAAAAGGTTGGAAAATTTTTTCTCAAAATTACTCTCTACAACATGGTTGTTTTGTAATCTTTAAATATAAAGAAGGAACTTCAGAGTTAGATGTGCTAATACTTGGCCAGAATGCACTAGAAATTGACTACGATTTATCACGTCACACTTCTGATGATGAATATGGAAACCTTGACCATAGTGATGATGAATCAGTTGAGACTTTGAATGTTGATGATAGTGATGATGAATCAATTGAGATTCTGAATGAATGGCATAATGAGAAGAAGCCTAGACAGCGATCAACATTAGCTTCTCGTAGACCACATAAAAAAGTTAGAGGTGAGATTGAGAAGAATAGTCAAAGAAGTACATCATTGAATAGGCCAAGGGAATATAGAGCTCGGGAAGTTGCCGAAGAATTTATCTCACGCAATCCCTTTTTCACAATTTCGATCAATCCTGCTAATCTGGTAGCAAATGTACTGACAGTACCAATTTTAAAAGGAGTTATTGAGAACGAGAATACGAATGTGATGTTGCAGATTGGTAAAAGATCATGGAATCTGAAATTGCTTCGATGTTACAATGATAGAGCTAAGCGTCGCTTTTCGGTTGGTTGGTGCGCGTTTGCCAAGGAAACTGGAGTGCAACCAGGAGATGTTTGTGTGTTTGAACTGATAAACAAGAAAGATTTAGTTTTTAAAGTTCATGTTTTTTAA 951 0.368 MAPRANSTIPVYFFMIILQTNLQTIVTIPFNLLLPSPTFVISKIPSKFTRSHGAGLPNPVLIKPPDGTKWKVFWKNINGEIWFQKGWKIFSQNYSLQHGCFVIFKYKEGTSELDVLILGQNALEIDYDLSRHTSDDEYGNLDHSDDESVETLNVDDSDDESIEILNEWHNEKKPRQRSTLASRRPHKKVRGEIEKNSQRSTSLNRPREYRAREVAEEFISRNPFFTISINPANLVANVLTVPILKGVIENENTNVMLQIGKRSWNLKLLRCYNDRAKRRFSVGWCAFAKETGVQPGDVCVFELINKKDLVFKVHVF 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05194 316 CDD B3_DNA 255 316 IPR003340 GO:0003677
Vivi3g05194 316 ProSiteProfiles B3 DNA-binding domain profile. 44 121 IPR003340 GO:0003677
Vivi3g05194 316 SMART B3_2 224 314 IPR003340 GO:0003677
Vivi3g05194 316 SMART B3_2 30 121 IPR003340 GO:0003677
Vivi3g05194 316 ProSiteProfiles B3 DNA-binding domain profile. 262 316 IPR003340 GO:0003677
Vivi3g05194 316 SUPERFAMILY DNA-binding pseudobarrel domain 43 128 IPR015300 -
Vivi3g05194 316 CDD B3_DNA 44 118 IPR003340 GO:0003677
Vivi3g05194 316 Gene3D - 204 316 IPR015300 -
Vivi3g05194 316 Pfam B3 DNA binding domain 43 115 IPR003340 GO:0003677
Vivi3g05194 316 Pfam B3 DNA binding domain 250 316 IPR003340 GO:0003677
Vivi3g05194 316 SUPERFAMILY DNA-binding pseudobarrel domain 220 316 IPR015300 -
Vivi3g05194 316 MobiDBLite consensus disorder prediction 166 206 - -
Vivi3g05194 316 PANTHER B3 DOMAIN-CONTAINING 12 315 - -
Vivi3g05194 316 Gene3D - 10 122 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05194 Vivi-Chr3 103812459 103813926 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05194 43 316 B3 DNA Binding Superfamily AT3G18990 25.076 5.07e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi3g05194 B3 6.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05194 - - vvo:131658711 648.277