Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05193 ATGAATAGTCAAAGAACTTCATCATTGAATAGGCCAAGGGAATATAGAGCTCGGGAAGTTGCCGAAGAATTTATCTCACGCAATCCCTTTTTCACAATTTCGATCAATCCTGCTAATCTGGTAGCAAATGTGCTGACTGTACCACTTTTAAAAGGGGTTATTGAGAACCAGAATACGAATGTGATGCTGCAGATTGGTGAAAGATCATGGAATCTGAAATTGCTTCGATGTTACAATGATAGAGCTAAGCGTCGCTTTTCGGCTGGTTGGTGCGCGTTTGCCAAGGAAAGTGGAGTGCAAGCAGGAGATGTTTGTGTGTTTGAACTGATAAACAAGAAAAATTTAGTTTTTAAAGTTCATGTTTTTTAA 369 0.3902 MNSQRTSSLNRPREYRAREVAEEFISRNPFFTISINPANLVANVLTVPLLKGVIENQNTNVMLQIGERSWNLKLLRCYNDRAKRRFSAGWCAFAKESGVQAGDVCVFELINKKNLVFKVHVF 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05193 122 ProSiteProfiles B3 DNA-binding domain profile. 68 122 IPR003340 GO:0003677
Vivi3g05193 122 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 6 122 IPR044837 -
Vivi3g05193 122 Pfam B3 DNA binding domain 55 121 IPR003340 GO:0003677
Vivi3g05193 122 CDD B3_DNA 61 122 IPR003340 GO:0003677
Vivi3g05193 122 Gene3D - 10 122 IPR015300 -
Vivi3g05193 122 SUPERFAMILY DNA-binding pseudobarrel domain 26 122 IPR015300 -
Vivi3g05193 122 SMART B3_2 30 120 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05193 Vivi-Chr3 103805094 103805629 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05193 3 122 REM Transcription Factor Family AT1G49480 30.645 4.88e-14 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi3g05193 B3 1.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05193 - - vvo:131658711 233.032