Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05176 ATCAATGGTGAGATTTGGTTTCAAAAGGGTTGGAAAACTTTTACTCAAAATTACTCTCTTCAACATGGTTGTTTGGTAGTCTTTAAATATAAAAAAGGAAGTTCAGAGTTAGATGTAATCATACTTGGCCTGCATGCAGTAGAAATTGACTATGATGACAATCTTGATGATAGCGATGATGAATCAGTTGAGATTTTGAATGAATGGCTTAATAGGAAGAAGCTTAGACAGAAGTCACCATTAATTTCTCTTAGACCACATAAAAAAGTGAGAGGTGAGATTGAGAAAAATAGTCAAAGAAGTACATCATTGAATAGGCCAAAGGAATCTAGAGCTCGGGAAGTTGCTGAAGAATTTATCTCAACCAATCCCTTTTTCACAATTTTGATCAAGCCTGCTAATCTGGCAGCAAATCGGCTGAGTGTACCGATTTTAAAAGGGGTTATTGAGAACAGGAAGACGAATGTGATGCTGCAGATTGGTGAAAGATCATGGCATCTGAAATTGCTTCCTTGTTACAATGGTAAAAAGGACCGTCGCCTTTCGGCTGGTTGGTCCTTGTTTGCAAGGGAAAGTGGACTGAAACCAGGAGATGTATGCATCTTTGAACTGATAAACAAGGAAGATTTAGTTTTTAAAGTTCATGTTTTTTAA 654 0.37 INGEIWFQKGWKTFTQNYSLQHGCLVVFKYKKGSSELDVIILGLHAVEIDYDDNLDDSDDESVEILNEWLNRKKLRQKSPLISLRPHKKVRGEIEKNSQRSTSLNRPKESRAREVAEEFISTNPFFTILIKPANLAANRLSVPILKGVIENRKTNVMLQIGERSWHLKLLPCYNGKKDRRLSAGWSLFARESGLKPGDVCIFELINKEDLVFKVHVF 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05176 217 ProSiteProfiles B3 DNA-binding domain profile. 125 217 IPR003340 GO:0003677
Vivi3g05176 217 CDD B3_DNA 125 217 IPR003340 GO:0003677
Vivi3g05176 217 SMART B3_2 125 215 IPR003340 GO:0003677
Vivi3g05176 217 ProSiteProfiles B3 DNA-binding domain profile. 1 45 IPR003340 GO:0003677
Vivi3g05176 217 Gene3D - 104 217 IPR015300 -
Vivi3g05176 217 SUPERFAMILY DNA-binding pseudobarrel domain 121 217 IPR015300 -
Vivi3g05176 217 Gene3D - 1 45 IPR015300 -
Vivi3g05176 217 SUPERFAMILY DNA-binding pseudobarrel domain 3 52 IPR015300 -
Vivi3g05176 217 PANTHER B3 DOMAIN-CONTAINING 2 215 - -
Vivi3g05176 217 Pfam B3 DNA binding domain 125 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05176 Vivi-Chr3 103418372 103419610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05176 2 217 B3 DNA Binding Superfamily AT3G18990 24.476 3.73e-19 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi3g05176 B3 6.2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05176 - - vvo:131658695 429.869