Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05175 ATGGCTAGAACAAATTCAACCCTCCCCATCAGTTTCTTCAAGATTATTCTTCAAACCAATCTTCAAACTATTAAAATACCAAATAAATTTACAAGAAATCACGGAGCTGGTCTACCAAATCCAGTGATGATCAAGCCTCCTGATGGCACTAAATGGAAAGTGTTTTGGAAAAATATCAATGGTGAGATTTGGTTTCAAAAAGGTTGGAAATTTTTTACTCAAAATTACTCTCTACAACATGGTTGTTTGGTAGTGTTTAAATATAAAGAAGGAACTTCAGAGTTAGATGTAGTGATACTTGGCCAGAATGGAGTAGAAATTGATTATGATTCTTCATGTAACACTTTCGATGATGAAAATGAAAACCTTGACGATAGTGATGATGAATCAGTTAAGATTTGGAATGCACGGCCTAGTCAGAAGAAGGCTAGACAGAGATCACCTTCGGTATCTCCTAGACCGCATAAGAAAGTTAAAGGTGGGATTGAGAAGAATAGTCAAAGAACTACATCTTTGAATATTCCAAAGGAATCTAGAGCTCGGGAAGTTGCCGAAGAATTTATCTCAACCAATCCATTTTTCACAATTTTGATCAAGCCTTATAATCTGGTAGCAAGCGGGTTGAGTTGGTTGAATTTAAAAGAAATTATTGAGAGTAAGGAGAAGTATGTGAAGGTGCAGATTGGTAAAAGATCATGGAATCTGAAATTGCTCCCTTATTACAGAGATAAAACTAGGGGTCGCTTTTCTGCTGGTTGGTCTAAGTTTGCAAAGGAAAGTGGACTGCAACCCGGAAATGTCTGCGTGTTTGAACTGATAAACAAGGAAGATTTAGTTTTTAAAGTTCATGTTTTCTAA 858 0.3625 MARTNSTLPISFFKIILQTNLQTIKIPNKFTRNHGAGLPNPVMIKPPDGTKWKVFWKNINGEIWFQKGWKFFTQNYSLQHGCLVVFKYKEGTSELDVVILGQNGVEIDYDSSCNTFDDENENLDDSDDESVKIWNARPSQKKARQRSPSVSPRPHKKVKGGIEKNSQRTTSLNIPKESRAREVAEEFISTNPFFTILIKPYNLVASGLSWLNLKEIIESKEKYVKVQIGKRSWNLKLLPYYRDKTRGRFSAGWSKFAKESGLQPGNVCVFELINKEDLVFKVHVF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05175 285 CDD B3_DNA 11 100 IPR003340 GO:0003677
Vivi3g05175 285 ProSiteProfiles B3 DNA-binding domain profile. 231 285 IPR003340 GO:0003677
Vivi3g05175 285 MobiDBLite consensus disorder prediction 118 170 - -
Vivi3g05175 285 Pfam B3 DNA binding domain 20 97 IPR003340 GO:0003677
Vivi3g05175 285 Pfam B3 DNA binding domain 221 285 IPR003340 GO:0003677
Vivi3g05175 285 Gene3D - 6 104 IPR015300 -
Vivi3g05175 285 CDD B3_DNA 192 285 IPR003340 GO:0003677
Vivi3g05175 285 Gene3D - 173 285 IPR015300 -
Vivi3g05175 285 SUPERFAMILY DNA-binding pseudobarrel domain 189 285 IPR015300 -
Vivi3g05175 285 PANTHER B3 DOMAIN-CONTAINING 10 283 - -
Vivi3g05175 285 SMART B3_2 193 283 IPR003340 GO:0003677
Vivi3g05175 285 SMART B3_2 12 103 IPR003340 GO:0003677
Vivi3g05175 285 ProSiteProfiles B3 DNA-binding domain profile. 9 103 IPR003340 GO:0003677
Vivi3g05175 285 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05175 Vivi-Chr3 103357388 103358796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05175 8 285 B3 DNA Binding Superfamily AT3G18990 27.941 3.20e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi3g05175 B3 2.2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05175 - - vvo:131658711 402.905