Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05171 ATGGCTACACTGGGTTTCGCTGTCGCTGGTCTCTCCGGTGTTCGTCCTCTCCGATTCACCGAAGACTGTTCCACATCCTCTAGGTCCTTCCAGAAACCGAGTTCCAATCACTCGACTCGCCGCAGGGTTTCAATCCGAGCCGTAGCGGCAGCAGTCGAGTCACGGCGGCCGGCGAAGAGTTTGTACGAAGTTCTCCGACTTAAGCCAGGAGCATCACCTACGGACATCAGATCGGCGTACCGAAGTCTAGCAAAGGTTTACCATCCCGACACGGCGGCACGACGCTTGCCGGAGTGCGACGACGGAGACTTCATCGAGATCCGCAACGCTTATGAGACGCTTTATGATCCGTCGACGAGAGCGGTTTACGATATGTCGCTGATGGCAGTACACGGCGGAAGAAGCCGGCAGTTTTCGGCTCCGATGACACAGAAACGGTATTCTGGATATTATACGAACCGGAGATGGGAAACGGACCAATGCTGGTAG 489 0.5562 MATLGFAVAGLSGVRPLRFTEDCSTSSRSFQKPSSNHSTRRRVSIRAVAAAVESRRPAKSLYEVLRLKPGASPTDIRSAYRSLAKVYHPDTAARRLPECDDGDFIEIRNAYETLYDPSTRAVYDMSLMAVHGGRSRQFSAPMTQKRYSGYYTNRRWETDQCW 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05171 162 Pfam DnaJ domain 61 124 IPR001623 -
Vivi3g05171 162 CDD DnaJ 62 116 IPR001623 -
Vivi3g05171 162 ProSiteProfiles dnaJ domain profile. 60 127 IPR001623 -
Vivi3g05171 162 SUPERFAMILY Chaperone J-domain 57 133 IPR036869 -
Vivi3g05171 162 ProSitePatterns Nt-dnaJ domain signature. 104 123 IPR018253 -
Vivi3g05171 162 Gene3D DnaJ domain 46 148 IPR036869 -
Vivi3g05171 162 SMART dnaj_3 59 119 IPR001623 -
Vivi3g05171 162 PRINTS DnaJ domain signature 62 80 IPR001623 -
Vivi3g05171 162 PRINTS DnaJ domain signature 99 119 IPR001623 -
Vivi3g05171 162 PRINTS DnaJ domain signature 80 95 IPR001623 -
Vivi3g05171 162 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 28 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05171 Vivi-Chr3 103205119 103205881 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05171 51 124 C2H2 Transcription Factor Family AT1G74250 44.156 1.07e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05171 - - tpra:123912861 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05171 3 103205119 103205881 Vivi3g05171 3 103205119 103205881 ECH