Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05163 ATGGCTAGAGCAAATGCCACCCTTCCTATCAGTTTCTTCAAGATTATTCTTCAAACCAATCTTCAAACTATTAAAATACCAAATAAATTTACAAAGATTCATGGAGCAAGTCTCCCAAATCCAGTGATGATGAAGCCTCCTGATGGCACAAAATGGAAAGTGTTTTGGAAAAACATCAATGGTGAGATATGGTTTCAAAAGGGTTGGAGTATTTTTACTAAAAACTACTCTCTACAACATGGTTGTTTGGTAGTGTTTAAGTATAAGGAAGGAAGTTCAGAGTTAGATGTAATCATACTTGGCCAGAATGCAGTAGAAATCGATTATGGTTTTTCATGTAACACTCTTGATGAAACTGAAAACCTTGGCCATAGTGATGATGAATCAGTTGAGATTTTAAATGACGATGATGAATCATTTGAGATTTTGAAGGATAAGAAGGCTAGACAGAAGTCACCTTTAGTTTCTCCTAGACCACATAAAAAAGTTAGAGGTGAGATTAAGGAGACTAGTGGAAAAAATACATCATTGAATTGTCCAAGAGGAAAGAGAGCTCAAGAAGTAGCTGCAAAGTTCATCTCTAGCAATCCTTTTTTCACTATTCTCATAAAACCTAATCATCTCAGAGATTATCGGATGAGTGTACCAAATCTCAAAGGAATTATTGAGGATAAAGAGAAGTATCTGATTCTGAAGAATGAGAAAATGTTGTGGAATGTGAAATTGCTTTGTTCCAAGAAGAATTCAAACGAACGCTTCCTATCAGCTGGTTGGTCCTTATTTGCACGTGAAACTGGACTGCAATCAGGAGATGTTTGTGTTTTTGAACTGATGAACAAAGAGGATTTAGTTTTTAAAGTTCATGTTTTCTGA 873 0.354 MARANATLPISFFKIILQTNLQTIKIPNKFTKIHGASLPNPVMMKPPDGTKWKVFWKNINGEIWFQKGWSIFTKNYSLQHGCLVVFKYKEGSSELDVIILGQNAVEIDYGFSCNTLDETENLGHSDDESVEILNDDDESFEILKDKKARQKSPLVSPRPHKKVRGEIKETSGKNTSLNCPRGKRAQEVAAKFISSNPFFTILIKPNHLRDYRMSVPNLKGIIEDKEKYLILKNEKMLWNVKLLCSKKNSNERFLSAGWSLFARETGLQSGDVCVFELMNKEDLVFKVHVF 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05163 290 SUPERFAMILY DNA-binding pseudobarrel domain 194 290 IPR015300 -
Vivi3g05163 290 CDD B3_DNA 11 100 IPR003340 GO:0003677
Vivi3g05163 290 ProSiteProfiles B3 DNA-binding domain profile. 198 290 IPR003340 GO:0003677
Vivi3g05163 290 MobiDBLite consensus disorder prediction 147 180 - -
Vivi3g05163 290 SUPERFAMILY DNA-binding pseudobarrel domain 11 109 IPR015300 -
Vivi3g05163 290 Gene3D - 180 290 IPR015300 -
Vivi3g05163 290 PANTHER B3 DOMAIN-CONTAINING 11 288 - -
Vivi3g05163 290 CDD B3_DNA 198 290 IPR003340 GO:0003677
Vivi3g05163 290 SMART B3_2 198 288 IPR003340 GO:0003677
Vivi3g05163 290 SMART B3_2 12 103 IPR003340 GO:0003677
Vivi3g05163 290 Pfam B3 DNA binding domain 20 94 IPR003340 GO:0003677
Vivi3g05163 290 Pfam B3 DNA binding domain 198 290 IPR003340 GO:0003677
Vivi3g05163 290 Gene3D - 7 104 IPR015300 -
Vivi3g05163 290 ProSiteProfiles B3 DNA-binding domain profile. 9 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05163 Vivi-Chr3 102854864 102856422 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05163 8 290 B3 DNA Binding Superfamily AT3G18990 26.239 3.74e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi3g05163 B3 1.6e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05163 - - vvo:131658711 372.859