Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05162 ATGGCTAGAGAAAATTCCACCATCCCCATCTGTTTCTTCAAGATTATTCTTCAAACCAATCTTCAAACTATTAAAATACCGAATAAATTTACAAGGAGTCACGGTGCTGGTCTACCAAATCCAGTGATGATGAAGCCTCCTGATGGCACAAAATGGAAAGTGTTTTGGAAAAACATCAATGGTGAGATTTGGTTTCAAAAGGGTTGGAGTATTTTTACTCAAAATTACTCTCTACAACATGGCTGTTTGGTAGTCTTTAAATACTATAAAGAAGGAAGTTCAGAATTAGATGTAATCATACTTGACCAGCATGCAGTTGAAATTGACTATGATTCCTCATGTGACACTTTTAATGATGAAGATGAAAACCTTGACCATATTGATGATGAATCAGTTGAGATTTTGAATGATAAGAAGGCTAGACAGAAGTCACCATTAGTTTCTCCTCGACCACATAAAAAAGTTAGAGGTGATATTAAGGAGACTAGTGGAAGAACTACATCAATGAATTCTCCAAAGGGAAATAGGGCTCAGGAAGTAGCTGCAAGATTCATCACAAGCAATCCTTTTTTCACTATTCTCATAAAACCTAACCATCTCACAGATTATCAACTGACGGTACCAAATCTAAAAGGGGTTATTGAGAACAAAGAGAATTATGTGACTTTGAAGATTGGGAAAAGATCATGGAATGTGAAATTGCTACGTGTTAGCCTCCTAACGGCTGGTTGGTCCTTATTTGCGAGTGAGAGTGGATTGCAATCAGGAGATGTTTGTGTGTTTGAACAGATAAACAAACAAGATTTAGTTTTTAAAGTTCATGTTTTCTCTGGGAAAAGTAATCTATCTGTTTAA 855 0.3602 MARENSTIPICFFKIILQTNLQTIKIPNKFTRSHGAGLPNPVMMKPPDGTKWKVFWKNINGEIWFQKGWSIFTQNYSLQHGCLVVFKYYKEGSSELDVIILDQHAVEIDYDSSCDTFNDEDENLDHIDDESVEILNDKKARQKSPLVSPRPHKKVRGDIKETSGRTTSMNSPKGNRAQEVAARFITSNPFFTILIKPNHLTDYQLTVPNLKGVIENKENYVTLKIGKRSWNVKLLRVSLLTAGWSLFASESGLQSGDVCVFEQINKQDLVFKVHVFSGKSNLSV 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05162 284 MobiDBLite consensus disorder prediction 138 173 - -
Vivi3g05162 284 Pfam B3 DNA binding domain 20 102 IPR003340 GO:0003677
Vivi3g05162 284 Pfam B3 DNA binding domain 190 277 IPR003340 GO:0003677
Vivi3g05162 284 Gene3D - 7 105 IPR015300 -
Vivi3g05162 284 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Vivi3g05162 284 PANTHER B3 DOMAIN-CONTAINING 10 274 - -
Vivi3g05162 284 ProSiteProfiles B3 DNA-binding domain profile. 190 279 IPR003340 GO:0003677
Vivi3g05162 284 SUPERFAMILY DNA-binding pseudobarrel domain 187 277 IPR015300 -
Vivi3g05162 284 CDD B3_DNA 190 277 IPR003340 GO:0003677
Vivi3g05162 284 Gene3D - 170 279 IPR015300 -
Vivi3g05162 284 SUPERFAMILY DNA-binding pseudobarrel domain 10 111 IPR015300 -
Vivi3g05162 284 CDD B3_DNA 11 102 IPR003340 GO:0003677
Vivi3g05162 284 SMART B3_2 190 279 IPR003340 GO:0003677
Vivi3g05162 284 SMART B3_2 12 104 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05162 Vivi-Chr3 102828685 102830017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05162 8 276 B3 DNA Binding Superfamily AT3G18990 26.254 1.95e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi3g05162 B3 2.8e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05162 - - vvo:131658711 370.163