Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05161 ATGGCTAGAGGAAATTCCACCATCCCCATCTGTTTCTTCAAGATTATTCTTCAAACCAATCTACAAACTATTAAAATACCAAATAAATTTACAAGGATTCACGGAGCTGGTCTCCCAAATCCAGTGATGATGAATCCTCCTGATGGCACTAAATGGAAAGTGTTTTGGAAAAACATCAATGGTGAGATTTGGTTTCAAAAGGGTTGGAATGTTTTTACTAAAAACTACTCTCTACAACATGGTTGTTTGGTAGTGTTTAAATATAAAGGAAGTTCAGAGTTAGATGTAATCATACTTGACCAACATGCAGTAGAAATCGACTATGATTCTTCATGTGACATTCTTGTTGAAACTGACAATGTTGATGATAGTGATGATGAATCAGTTGAGATTTTGAATGAATGGCTTAATAAGAAGAAGGCTAGACCGAAGTCACCATTAGTTTCTCCTAGACCGCATAAGAAAGTTAGAGGTGAGATTAAGGAGACTAGTGAAAGAACTACATCATTGAATTCTCCAAGAGAAAATAGAGCTGAGGAAGTAGCTGCAAGATTCATCACAAACAATCCCTTTTTCACTATTCTCATAAAACCTAATCATCTGACTGAATATCTGCTGAGTGTACCAAATCTCGAAGGAATTATTGAGAATAAAGAAAGGTATGTGATTCTGAAGAATGAGAAATCTTCGTGGAATGTGAAATTGCTTTGTTCTAAGAAGAATTCAAACAAACGCTTCCTATCGGCTGGTTGGTCCTTATTTGCACGGGAAACTGGACTGCAATCAGGAGATGTTTGTGTCTTTGAACTGATGAACAAAGAGGATTTAGTTTTTAAAGTTCATGTTTTCTGA 852 0.3592 MARGNSTIPICFFKIILQTNLQTIKIPNKFTRIHGAGLPNPVMMNPPDGTKWKVFWKNINGEIWFQKGWNVFTKNYSLQHGCLVVFKYKGSSELDVIILDQHAVEIDYDSSCDILVETDNVDDSDDESVEILNEWLNKKKARPKSPLVSPRPHKKVRGEIKETSERTTSLNSPRENRAEEVAARFITNNPFFTILIKPNHLTEYLLSVPNLEGIIENKERYVILKNEKSSWNVKLLCSKKNSNKRFLSAGWSLFARETGLQSGDVCVFELMNKEDLVFKVHVF 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05161 283 CDD B3_DNA 191 283 IPR003340 GO:0003677
Vivi3g05161 283 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Vivi3g05161 283 CDD B3_DNA 11 100 IPR003340 GO:0003677
Vivi3g05161 283 Pfam B3 DNA binding domain 20 94 IPR003340 GO:0003677
Vivi3g05161 283 Pfam B3 DNA binding domain 191 283 IPR003340 GO:0003677
Vivi3g05161 283 SUPERFAMILY DNA-binding pseudobarrel domain 188 283 IPR015300 -
Vivi3g05161 283 MobiDBLite consensus disorder prediction 142 174 - -
Vivi3g05161 283 PANTHER B3 DOMAIN-CONTAINING 10 281 - -
Vivi3g05161 283 SMART B3_2 191 281 IPR003340 GO:0003677
Vivi3g05161 283 SMART B3_2 12 102 IPR003340 GO:0003677
Vivi3g05161 283 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Vivi3g05161 283 ProSiteProfiles B3 DNA-binding domain profile. 191 283 IPR003340 GO:0003677
Vivi3g05161 283 Gene3D - 8 103 IPR015300 -
Vivi3g05161 283 Gene3D - 171 283 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05161 Vivi-Chr3 102711948 102713186 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05161 12 283 B3 DNA Binding Superfamily AT3G18990 25.749 1.86e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi3g05161 B3 2.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05161 - - vvo:131658711 370.933