Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05132 ATGGGGCGTATTCCATGCTGTGAGAAGGACAATGTGAAGAGAGGTCAGTGGACACCTGAGGAAGATAACAAGCTCACTTCTTACATTGCTCAACACGGTACTCGTAACTGGCGCCTCATTCCTAAGAATGCTGGCCTTCAGAGATGTGGAAAGAGCTGCAGGCTAAGGTGGACTAATTACCTTCGTCCTGATCTTAAACATGGGCATTTCTCGGATGCAGAAGAGCAAACCATTGTGAAGCTTCATTCTGTTTTTGGCAACAGATGGTCACTGATAGCAGCCCAGCTGCCAGGACGCACTGACAATGATGTCAAAAACCATTGGAACACCAAGCTGAAAAAGAAACTGTCAGGCATGGGTATAGACCCTGTCACCCACAAGCCATTCTCTCATCTAATGGCTGAAATTGCTACAACATTGGCACCCCCACAGGCAGCTCACCTAGCTGAAGCAGCTCTTGGTTGTTTTAAAGATGAGGTGCTCCACCTACTTACCAGGAAGCCGATTAACTATCAGGGCCAACATTCTAATGCAGGACTGGCAAATAACATCACCGATTACTTCACCTGTAAGCCAGAAGAAAGGGAAGACACTGTTGAGAAGATTAAGTTTGACCTATCAAAGGCCATGCAACAAGAACATGAAATGATGCCCTCAAATAAACCATGGGACTCCACTGCAGCTACATCTTCAAGTTTTGCAATGCCATACAGTGTTTTCCCTACAATGTCTGGGTTCCAATTCAGCCCATCATGTTTTGGAAATAAAGGGGATGCATCACCGTGGAGCCAGAGTTTATGTACTGGAAGCACATGCACAGGCATAGATCATCAAAGCCAGTTCCATGAAAAACTCGAAGAGGAAAATGGGGATGATTCCGAGGCTACAAAAGAAATTAGAAATCTATCCAATATATTCAACTCAGACTGCGTCATGTGGGATTTACCAGCTGATGATTTAATTAACCCCATGGTATAA 978 0.4479 MGRIPCCEKDNVKRGQWTPEEDNKLTSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGHFSDAEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTRKPINYQGQHSNAGLANNITDYFTCKPEEREDTVEKIKFDLSKAMQQEHEMMPSNKPWDSTAATSSSFAMPYSVFPTMSGFQFSPSCFGNKGDASPWSQSLCTGSTCTGIDHQSQFHEKLEEENGDDSEATKEIRNLSNIFNSDCVMWDLPADDLINPMV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05132 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi3g05132 325 Gene3D - 69 128 - -
Vivi3g05132 325 FunFam Transcription factor RAX3 7 67 - -
Vivi3g05132 325 CDD SANT 70 112 IPR001005 -
Vivi3g05132 325 CDD SANT 17 61 IPR001005 -
Vivi3g05132 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vivi3g05132 325 PANTHER F14D16.11-RELATED 1 323 - -
Vivi3g05132 325 FunFam transcription factor MYB80 69 129 - -
Vivi3g05132 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi3g05132 325 Gene3D - 14 66 - -
Vivi3g05132 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vivi3g05132 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi3g05132 325 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Vivi3g05132 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi3g05132 325 SMART sant 13 63 IPR001005 -
Vivi3g05132 325 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05132 Vivi-Chr3 101934600 101936773 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05132 1 325 MYB Transcription Factor Family AT5G56110 56.495 8.95e-119 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi3g05132 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05132 K09422 - gmx:100800764 591.267