Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05122 ATGCAACCCAAGTCTGAAACTGCAAATCAAGCGAGGTCGGATCCACATTCCTTACAGACAGCTGGTGTCGGTGGTGTTTACTCTGAACCCTGGTGGCGTGGTGTTGGATACAATCCTGTAGGGCAAACAATGTCTGGTGCCAATTCATCGTCTATTGACTGCCGCAATGGTGATTCAGAATCCAATGAGGAAGGACAGTCTATGTCCAATAGTGGAGTGAATGAGGAAGATGATGATACCGCTAAGGATTCGCAGCCTGCTGCTCCTAATCAATCAGGAAATGAACAACAAGGAATGCAGCACACTGCATCATCTGCACTTATCGTTCACGAAGAAGGCCTCACACAAGCTCCTCCGATGGAGCTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAGGATCCATATTATGGGGGCATGATGGCAGCTTATGGTCACCAGCAGTTGGCATATCATCCTTTTATGGGAATGCCTCATCCCAGAATGCCTTTGCCCCTTGAGATGGCTCAGGAACCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTGAGGCGAAGACAAGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTCATAAAATCTAGAAAGCCATATCTTCATGAATCTAGACATCAGCATGCTATGAGAAGGGCAAGAGGCACGGGAGGACGATTTGCAAAGAAAACTGATGGCGAAGGCTCAAACAACTCAGGAAAGGATAATGGCTCTGGTCCAGTCCTGTCATCACATTCAATTAGTTCATCTGGTTCAGAACCCTTGCCTTCAGACTCTGCCGAAACCTGGAATTCTCCCAACATGCGACAAGATACAAGAGGATCGAATGAAAACGGTGGTGTCTCGTACCATAATAACAACAATGATATGCAATCTTCAAGATATCAAGGTGAAAGAGTGGATGAAGGGGACTGTTCAGGGCAACTACGCGGAAGCATCTCCTCAAACGAGGCATCACAGAGACGTCTAGCTATTCAGTAG 1005 0.4627 MQPKSETANQARSDPHSLQTAGVGGVYSEPWWRGVGYNPVGQTMSGANSSSIDCRNGDSESNEEGQSMSNSGVNEEDDDTAKDSQPAAPNQSGNEQQGMQHTASSALIVHEEGLTQAPPMELVGHSIACATNPYQDPYYGGMMAAYGHQQLAYHPFMGMPHPRMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEGSNNSGKDNGSGPVLSSHSISSSGSEPLPSDSAETWNSPNMRQDTRGSNENGGVSYHNNNNDMQSSRYQGERVDEGDCSGQLRGSISSNEASQRRLAIQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05122 334 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Vivi3g05122 334 MobiDBLite consensus disorder prediction 84 102 - -
Vivi3g05122 334 MobiDBLite consensus disorder prediction 1 17 - -
Vivi3g05122 334 MobiDBLite consensus disorder prediction 206 225 - -
Vivi3g05122 334 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Vivi3g05122 334 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 286 IPR001289 GO:0003700|GO:0006355
Vivi3g05122 334 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Vivi3g05122 334 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Vivi3g05122 334 MobiDBLite consensus disorder prediction 41 74 - -
Vivi3g05122 334 MobiDBLite consensus disorder prediction 1 102 - -
Vivi3g05122 334 MobiDBLite consensus disorder prediction 316 334 - -
Vivi3g05122 334 MobiDBLite consensus disorder prediction 204 334 - -
Vivi3g05122 334 Gene3D - 171 233 - -
Vivi3g05122 334 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Vivi3g05122 334 MobiDBLite consensus disorder prediction 233 302 - -
Vivi3g05122 334 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05122 Vivi-Chr3 101425096 101428498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05122 26 273 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.512 2.91e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vivi3g05122 CBFB_NFYA 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05122 K08064 - gmx:100808378 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05122 3 101425096 101428498 Vivi3g05122 3 101425096 101428498 ECH