Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05086 ATGACGTCCTACTCAAGAAGATCAAGGTATTCGCCCTCTCCCTCACCCTCGCCATACAGGCGTTACGGTAGGTCTTTGTCCAGGTCTCTCTCAAGGTCCAGATCCGGAAGCCGTTCAAGGAGCATATCACGAGATGCTGAAAATCCGGGAAACAATTTGTATGTGACGGGACTGTCTCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTGCTGCTGAAGGAAAAGTGGTAGATGTTCATCTGGTTGTTGATCCATGGACAAGGGAGTCCCGTGGTTTTGGATTTGTGACAATGAGTACTCTAGAAGAAGCTGATCGTTGTGTGAAGTATCTGGATCGCTCCGTACTTGAAGGGCGTGTTATCATGGTGGAGAAGTTTCTGTGGCAGCAGGTTAGGGTGTGA 405 0.4864 MTSYSRRSRYSPSPSPSPYRRYGRSLSRSLSRSRSGSRSRSISRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVVDVHLVVDPWTRESRGFGFVTMSTLEEADRCVKYLDRSVLEGRVIMVEKFLWQQVRV 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05086 134 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 41 126 - -
Vivi3g05086 134 Gene3D - 3 128 IPR012677 -
Vivi3g05086 134 SUPERFAMILY RNA-binding domain, RBD 11 125 IPR035979 GO:0003676
Vivi3g05086 134 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 122 IPR000504 GO:0003723
Vivi3g05086 134 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 125 IPR000504 GO:0003723
Vivi3g05086 134 MobiDBLite consensus disorder prediction 1 54 - -
Vivi3g05086 134 SMART rrm1_1 52 125 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05086 Vivi-Chr3 100046797 100049033 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05086 52 134 Eukaryotic Initiation Factors Gene Family AT3G16380 32.530 1.97e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05086 - - egr:104422415 184.111