Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05085 ATGACGTCCTACTCAAGAAGATCAAGGTATTCGCCCTCTCCCTCACCCTCGCCATACAGGCGTTACGGTAGGTCTTTGTCCAGGTCTCTCTCAAGGTCCAGATCCGGAAGCCGTTCAAGGAGCATATCACGAGATGCTGAAAATCCGGGAAACAATTTGTATGTGACGGGACTGTCTCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTGCTGCTGAAGGAAAAGTGGTAGATGTTCATCTGGTTGTTGATCCATGGACAAGGGAGTCCCGTGGTTTTGGATTTGTGACAATGAGTACTCTAGAAGAAGCTGATCGTTGTGTGAAGTATCTGGATCGCTCCGTACTTGAAGGGCGTGTTATCATGGTGGAGAAGGTTAGGGTGTGA 390 0.4846 MTSYSRRSRYSPSPSPSPYRRYGRSLSRSLSRSRSGSRSRSISRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVVDVHLVVDPWTRESRGFGFVTMSTLEEADRCVKYLDRSVLEGRVIMVEKVRV 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05085 129 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Vivi3g05085 129 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 122 IPR000504 GO:0003723
Vivi3g05085 129 MobiDBLite consensus disorder prediction 1 54 - -
Vivi3g05085 129 Gene3D - 3 129 IPR012677 -
Vivi3g05085 129 SUPERFAMILY RNA-binding domain, RBD 11 125 IPR035979 GO:0003676
Vivi3g05085 129 SMART rrm1_1 52 125 IPR000504 GO:0003723
Vivi3g05085 129 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 47 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05085 Vivi-Chr3 100046797 100049033 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05085 52 124 Eukaryotic Initiation Factors Gene Family AT3G16380 34.247 4.13e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05085 - - vvo:131662224 186.037