Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05084 ATGACGTCCTACTCAAGAAGATCAAGGTATTCGCCCTCTCCCTCACCCTCGCCATACAGGCGTTACGGTAGGTCTTTGTCCAGGTCTCTCTCAAGGTCCAGATCCGGAAGCCGTTCAAGGAGCATATCACGAGATGCTGAAAATCCGGGAAACAATTTGTATGTGACGGGACTGTCTCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTGCTGCTGAAGGAAAAGTGGTAGATGTTCATCTGGTTGTTGATCCATGGACAAGGGAGTCCCGTGGTTTTGGATTTGTGACAATGAGTACTCTAGAAGAAGCTGATCGTTGTGTGAAGTATCTGGATCGCTCCGTACTTGAAGGGCGTGTTATCATGGTGGAGAAGGCTAGAAGACGACGCGGTCGAACCCCGACGCCTGGGAAATATCTAGGTCTCAGGACTATTCGAGGACGGCGTCGTTCTCCAAGCTACTCTCCTCGACGTTCTCCTAGCTATTCTCCGTATAGAAGAAGCTACAGTCGATCACCTTCTTATCGTAGTAGAAGTCGCTCCTACTCTCCTGAATACAGGCGAAGGAAGTCCTACTCTCCTGAATACAGGCGAAGGAGGGCATACTCGCCATACTCTAGCCGACACAGGTCATACTATCATTATGATAGACACAGGTCATATTCCCGGTCTCGCTCTCCTTACAGCAGGTCTCCTGTCAGCATGCGTGACCGATCACACTCTCCCTATGACTCTAGATATGACTCACCTGATGATAGCTACTACAGAAGGTACCGTTACAGGTCAGTATCCCGTAGTATTTCACCCAAGCCAAGGATGTCAAGGAGGAGGAGCTACTCAAGAAGTGTCTCTCCTGTTCGAAGTGTCTCCCCCAGGCCAAGGAAGAGATCAGGAAGGAGTCATTCAAGAACCTCTAGAAGGAGTGGTGGTTATTCCAAACTTAAGCATTCTCGATCAAGAAGTTCAAGTGTAAGAGCGAGTTCTAGATCGTTTTCAAGGTCCAATACTCCCGGGTCTACCTCTCCTTCAAATTGA 1038 0.4875 MTSYSRRSRYSPSPSPSPYRRYGRSLSRSLSRSRSGSRSRSISRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVVDVHLVVDPWTRESRGFGFVTMSTLEEADRCVKYLDRSVLEGRVIMVEKARRRRGRTPTPGKYLGLRTIRGRRRSPSYSPRRSPSYSPYRRSYSRSPSYRSRSRSYSPEYRRRKSYSPEYRRRRAYSPYSSRHRSYYHYDRHRSYSRSRSPYSRSPVSMRDRSHSPYDSRYDSPDDSYYRRYRYRSVSRSISPKPRMSRRRSYSRSVSPVRSVSPRPRKRSGRSHSRTSRRSGGYSKLKHSRSRSSSVRASSRSFSRSNTPGSTSPSN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05084 345 MobiDBLite consensus disorder prediction 128 345 - -
Vivi3g05084 345 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 122 IPR000504 GO:0003723
Vivi3g05084 345 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Vivi3g05084 345 MobiDBLite consensus disorder prediction 238 260 - -
Vivi3g05084 345 SMART rrm1_1 52 125 IPR000504 GO:0003723
Vivi3g05084 345 MobiDBLite consensus disorder prediction 1 51 - -
Vivi3g05084 345 MobiDBLite consensus disorder prediction 324 345 - -
Vivi3g05084 345 Gene3D - 4 135 IPR012677 -
Vivi3g05084 345 CDD RRM_SF 53 125 - -
Vivi3g05084 345 SUPERFAMILY RNA-binding domain, RBD 43 154 IPR035979 GO:0003676
Vivi3g05084 345 FunFam Serine/arginine-rich splicing factor SR45a 3 135 - -
Vivi3g05084 345 MobiDBLite consensus disorder prediction 155 181 - -
Vivi3g05084 345 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 43 310 - -
Vivi3g05084 345 MobiDBLite consensus disorder prediction 293 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05084 Vivi-Chr3 100045892 100049033 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05084 52 133 Eukaryotic Initiation Factors Gene Family AT2G36660 35.366 9.44e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05084 - - vvo:131662224 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05084 3 100045892 100049033 Vivi3g05084 3 100045892 100049033 ECH