Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05083 ATGACGTCCTACTCAAGAAGATCAAGGTATTCGCCCTCTCCCTCACCCTCGCCATACAGGCGTTACGGTAGGTCTTTGTCCAGGTCTCTCTCAAGGTCCAGATCCGGAAGCCGTTCAAGGAGCATATCACGAGATGCTGAAAATCCGGGAAACAATTTGTATGTGACGGGACTGTCTCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTGCTGCTGAAGGAAAAGTGGTAGATGTTCATCTGGTTGTTGATCCATGGACAAGGGAGTCCCGTGGTTTTGGATTTGTGACAATGAGTACTCTAGAAGAAGCTGATCGTTGTGTGAAGTATCTGGATCGCTCCGTACTTGAAGGGCGTGTTATCATGGTGGAGAAGGCTAGAAGACGACGCGGTCGAACCCCGACGCCTGGGAAATATCTAGGACGGCGTCGTTCTCCAAGCTACTCTCCTCGACGTTCTCCTAGCTATTCTCCGTATAGAAGAAGCTACAGTCGATCACCTTCTTATCGTAGTAGAAGTCGCTCCTACTCTCCTGAATACAGGCGAAGGAAGTCCTACTCTCCTGAATACAGGCGAAGGAGGGCATACTCGCCATACTCTAGCCGACACAGGTCATACTATCATTATGATAGACACAGGTCATATTCCCGGTCTCGCTCTCCTTACAGCAGGTCTCCTGTCAGCATGCGTGACCGATCACACTCTCCCTATGACTCTAGATATGACTCACCTGATGATAGCTACTACAGAAGGTACCGTTACAGGTCAGTATCCCGTAGTATTTCACCCAAGCCAAGGATGTCAAGGAGGAGGAGCTACTCAAGAAGTGTCTCTCCTGTTCGAAGTGTCTCCCCCAGGCCAAGGAAGAGATCAGGAAGGAGTCATTCAAGAACCTCTAGAAGGAGTGGTGGTTATTCCAAACTTAAGCATTCTCGATCAAGAAGTTCAAGTGTAAGAGCGAGTTCTAGATCGTTTTCAAGGTCCAATACTCCCGGGTCTACCTCTCCTTCAAATTGA 1020 0.4873 MTSYSRRSRYSPSPSPSPYRRYGRSLSRSLSRSRSGSRSRSISRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVVDVHLVVDPWTRESRGFGFVTMSTLEEADRCVKYLDRSVLEGRVIMVEKARRRRGRTPTPGKYLGRRRSPSYSPRRSPSYSPYRRSYSRSPSYRSRSRSYSPEYRRRKSYSPEYRRRRAYSPYSSRHRSYYHYDRHRSYSRSRSPYSRSPVSMRDRSHSPYDSRYDSPDDSYYRRYRYRSVSRSISPKPRMSRRRSYSRSVSPVRSVSPRPRKRSGRSHSRTSRRSGGYSKLKHSRSRSSSVRASSRSFSRSNTPGSTSPSN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05083 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Vivi3g05083 339 MobiDBLite consensus disorder prediction 149 175 - -
Vivi3g05083 339 SMART rrm1_1 52 125 IPR000504 GO:0003723
Vivi3g05083 339 MobiDBLite consensus disorder prediction 1 51 - -
Vivi3g05083 339 MobiDBLite consensus disorder prediction 287 317 - -
Vivi3g05083 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 122 IPR000504 GO:0003723
Vivi3g05083 339 SUPERFAMILY RNA-binding domain, RBD 43 156 IPR035979 GO:0003676
Vivi3g05083 339 MobiDBLite consensus disorder prediction 128 339 - -
Vivi3g05083 339 FunFam Serine/arginine-rich splicing factor SR45a 3 135 - -
Vivi3g05083 339 Gene3D - 4 135 IPR012677 -
Vivi3g05083 339 MobiDBLite consensus disorder prediction 232 254 - -
Vivi3g05083 339 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 43 305 - -
Vivi3g05083 339 MobiDBLite consensus disorder prediction 318 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05083 Vivi-Chr3 100045892 100049033 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05083 52 144 Eukaryotic Initiation Factors Gene Family AT2G36660 33.333 7.98e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05083 - - vvo:131662224 272.322