Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05081 ATGAAAAAACCATCAACTTCAAATTTGCATCAATCTAACCAAAGGAAGAAAAATATTGGCACAAATAACATAAATAGACACGATCCTAAGAATGATTATGGTACCATGACAAATTTCAAGTATGTTGTGAAAAAAATTTCAGGGCTTTTCACATTGATTCTGTCAGGGAAATCAAAAACATCCTCAGAACCTGTTGAAAATGATTCTGCAAGGAATAATAAAGTCAGAGGAGTATCATCTTCAACAACAGATGTATCATCTGAAAGTTCTAAGAGTTCATCAAAGTGGAAATCTTCTCATCCTTCAACACCTACTAGCACTTCAAGTAATCAAATTGGAGTTGGAAATTTTTCATTTGAGGAACTTTATAAGGGAACAGGAAAATTTTCTCCAGATAATAAGATTGGTGAAGGGGCGTTTGGAATTGTGTATAAGGGAAGGCTTTATGATGGAACCCTTGTGGCTGTAAAGTGTGCTAGGAAGGATGTACAAAAGAAGCACTTGGCTGAGTTCAAGAATGAGATAAACACGTTATCGAAAATTGAGCATCTGAATCTTGTGAGATGGCATGGATATTTGGAGCATGGAGATGAAAAGATTATTGTGATTGAATATGTTAATAATGGAACTCTTAGGGAACATCTAGATGGTGTGAGAGGAAATGGACTTGAAATTGGTAAGCGTTTGGATGTAGCAATTGATGTAGCTCATGCAGTTACATACCTTCATATGTACACAGATCATCCAATCATTCACAGAGATATAAAAGCATCAAATATCTTAATAACAGACGGTTTAAGAGCGAAAGTAGCAGATTTTGGTTTTGCTAGGTTGGGTTCAGAGGACCCTAATGCAACTCATGTTTCGACTCAAGTTAAAGGAACAGCTGGTTACTTGGATCCTGATTACATGAGAACAAGACAACTCAGTGAAAAGAGTGATGTTTATTCATTTGGTGTGTTACTTGTTGAAATGATGACAGGAAGATATCCAGTTGAACCAAAGAAACCCCTCAATGAGAGAGTTACAATTAAATGGGCAATGCAGTTACTAAAACAAGGAGAAGAAGTGATTGCAATGGATCCAAGGCTTAGGAGAAGTTCAGCCTCAAACAAAGCAGTACAAAAGGTTCTCAAGCTCGCATTCCAATGCCTTGCACCTGTACGAAGATCGCGGCCAACGATGCAGAATTGTGCAGAGGTTCTATGGGACATCAGAAAAGATTTCAGAGAGAAAGTATTTTTTCGTCCTCCCCTCGCTTCTCACCATTCGGCGGATTTTCCTCAGAAAGATGCGAGAAAGAATAGACGTAAGACGTTCGGTATTGAAGATGACAAGAAGTATAAATTTGTGTCTGCATAA 1362 0.3774 MKKPSTSNLHQSNQRKKNIGTNNINRHDPKNDYGTMTNFKYVVKKISGLFTLILSGKSKTSSEPVENDSARNNKVRGVSSSTTDVSSESSKSSSKWKSSHPSTPTSTSSNQIGVGNFSFEELYKGTGKFSPDNKIGEGAFGIVYKGRLYDGTLVAVKCARKDVQKKHLAEFKNEINTLSKIEHLNLVRWHGYLEHGDEKIIVIEYVNNGTLREHLDGVRGNGLEIGKRLDVAIDVAHAVTYLHMYTDHPIIHRDIKASNILITDGLRAKVADFGFARLGSEDPNATHVSTQVKGTAGYLDPDYMRTRQLSEKSDVYSFGVLLVEMMTGRYPVEPKKPLNERVTIKWAMQLLKQGEEVIAMDPRLRRSSASNKAVQKVLKLAFQCLAPVRRSRPTMQNCAEVLWDIRKDFREKVFFRPPLASHHSADFPQKDARKNRRKTFGIEDDKKYKFVSA 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05081 453 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 206 415 - -
Vivi3g05081 453 SUPERFAMILY Protein kinase-like (PK-like) 104 404 IPR011009 -
Vivi3g05081 453 ProSitePatterns Protein kinases ATP-binding region signature. 135 161 IPR017441 GO:0005524
Vivi3g05081 453 ProSiteProfiles Protein kinase domain profile. 129 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05081 453 Gene3D Phosphorylase Kinase; domain 1 87 205 - -
Vivi3g05081 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Vivi3g05081 453 SMART serkin_6 129 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05081 453 Pfam Protein tyrosine and serine/threonine kinase 132 402 IPR001245 GO:0004672|GO:0006468
Vivi3g05081 453 MobiDBLite consensus disorder prediction 59 112 - -
Vivi3g05081 453 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 106 407 - -
Vivi3g05081 453 MobiDBLite consensus disorder prediction 1 32 - -
Vivi3g05081 453 Gene3D Transferase(Phosphotransferase) domain 1 206 415 - -
Vivi3g05081 453 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05081 Vivi-Chr3 100014249 100017436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05081 124 405 Receptor kinase-like Gene Family AT5G59700 43.262 1.42e-63 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vivi3g05081 PK_Tyr_Ser-Thr 4.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05081 - - gmx:100819818 637.106