Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05078 ATGTCAAGGCCTGTTGAGAGAATAGCAGAGATCAATGATGGAAAAGAGCTTTGGAAGATTGTTGTTAGGATTCACCACCGATGGAAAGTTGTCTCCAACAGCAAGGAACATTTTGAAATGATCTTTGTTGACAAATTGGGAGATGATATTCATGCTGTTGTTCCAGCACCGCATGTGTCGGTTTTCACCGAAAAATGCTTATTAGGCCATACTTATACTGTATCTAATTTTAAGGTGGTGCCTTATGTTCTGGCCTTCAGGGCATCGGGACACAGATATATGATAAAGTTTACTGCTGGAACGTCTGTTCTTGATGAAGACAAACATGAGATACCCGCGAAATCGATTTTATTTACAAGTTTTTCAGACATCATAACAGGGAGGTTTGACAAACATGTTCTGATTCATGTCATTGGAATGGTGGATAGTATTGGTTATGCGCAGACTGAGTCAGGTGCAAAGAAGCAGCAAATTAGCATGATGTTGCGTGATCACAGCAACAACATGTTGAACTGTACTCTGTGGGAATCATACGCGGATCAGTTCATCAAGTTTAACAAAGTTAGGGTTGATGCATCACTACCTACAGTTGTGTTGCTTCAGTATGCCAAAGTGAAGGAAGAAGGAAAGTATCCTCTGTCTGTGACAAACACCTACAATGTGAGCCTTTTATGTGTTGATGCTGATTTTCCGATCATGAAAGACTTTATTGATAGAATGCCTGAGGAGAGCAAGGTAACCCTGTCTGACCAACTTGGAGGGAATTCCCAATATTCCTCCCAAAGTTCTGAAAATCAACAGCTCACTCCTGTCCAAAAATTGTTCTCAAAGGCTGTTGTTTTGCCTATTGCTGAGATTATTCAACTTACGGATGTTACATTTTGCGCTACTGTCGCTACAACAAAATTATTAGTAGCATCTCCGTTTGGATGGTTCTATCGTGCCTGCCATATGTGTCAATCTATAGCGCGCGGGGACAGCCCCCCCTTTGAGTGTGAATCTGGTCATGAAACCATGGCCGAAGTCCTTAGGTATAAGATTGAAATTGAGGTTACTCACGGGGGCCAAAGCTGCAATTTTGTCTTCTGGAACAGAGAATGTGAAATGCTGTTGGGTTTATCCGCATCGCAACTTCGTAACACTATGATTCAGGCTGGAATTACTGATCCATTGGACTTTCCGTTAGCACTTGATCAGTTGTTGAAGTTGGAAATGGCTATGAAGGTTAAGTGGCATCCACGCTGGAAGAACTGTTCCGTCGTTATGATTATAAAAAATGATCCTATTATCCAGCAACTTAAGGAAAAATGGGGAACAGATGAGGAACCTATTCCAATCCAAACTGTCGTACCTGATACTCTGGAGATTAAAGAGAGTGTTGATGAAGCTAAAACAGATGCCAATGAAGACTGTGAATTGGTTACAGACCTGGAAATTACATCTGAACACAAGCCGGATGCTGTTACACCTGGTGGTAAGAGACATCTTCCTGCTGCATCAAGTGAATCTATTGATGGGGAACTGTCATCAAACAAGCTGAAGAAGATAATTAAAATGGAAAAGATTGATTAG 1572 0.4135 MSRPVERIAEINDGKELWKIVVRIHHRWKVVSNSKEHFEMIFVDKLGDDIHAVVPAPHVSVFTEKCLLGHTYTVSNFKVVPYVLAFRASGHRYMIKFTAGTSVLDEDKHEIPAKSILFTSFSDIITGRFDKHVLIHVIGMVDSIGYAQTESGAKKQQISMMLRDHSNNMLNCTLWESYADQFIKFNKVRVDASLPTVVLLQYAKVKEEGKYPLSVTNTYNVSLLCVDADFPIMKDFIDRMPEESKVTLSDQLGGNSQYSSQSSENQQLTPVQKLFSKAVVLPIAEIIQLTDVTFCATVATTKLLVASPFGWFYRACHMCQSIARGDSPPFECESGHETMAEVLRYKIEIEVTHGGQSCNFVFWNRECEMLLGLSASQLRNTMIQAGITDPLDFPLALDQLLKLEMAMKVKWHPRWKNCSVVMIIKNDPIIQQLKEKWGTDEEPIPIQTVVPDTLEIKESVDEAKTDANEDCELVTDLEITSEHKPDAVTPGGKRHLPAASSESIDGELSSNKLKKIIKMEKID 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05078 523 MobiDBLite consensus disorder prediction 482 507 - -
Vivi3g05078 523 SUPERFAMILY Nucleic acid-binding proteins 294 411 IPR012340 -
Vivi3g05078 523 Gene3D - 110 249 IPR012340 -
Vivi3g05078 523 SUPERFAMILY Nucleic acid-binding proteins 7 103 IPR012340 -
Vivi3g05078 523 SUPERFAMILY Nucleic acid-binding proteins 118 243 IPR012340 -
Vivi3g05078 523 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Vivi3g05078 523 CDD RPA1_DBD_A_like 19 103 - -
Vivi3g05078 523 Gene3D - 3 104 IPR012340 -
Vivi3g05078 523 CDD RPA1_DBD_B_like 137 241 - -
Vivi3g05078 523 Gene3D - 255 433 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05078 Vivi-Chr3 99968781 99971518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05078 8 378 Core DNA Replication Machinery Family AT5G45400 20.690 1.47e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05078 - - vvo:131613993 862.062