Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05070 ATGGCCAAGAAGGGTTGGTTTAGCAGGATAGAGAGAATCTTTACACATTCCACTCAAGAGAAGAAGGAGAAAAGAAGAAAGTGGGTGTTTGGGAGGCTAAAGAACAAGAGACTTTCTTTAATTGAAGCACCGCCGCCATTAAAAGAAACACGGTTAAGTGAAGCTGAAGAAGAACACAACAGGCATGCTTTAACAATAGCTATTGCTTCGGCTGAAACTGCTCTAACTGCTGCTCAGGTTGCAGTTGAGGTTGTTAAGTTCCAATCTGTTCACCAATGTAAAGGTAAACTAGAAGAAGTTAAACATGTCAAAACTAAGTATGATGCTTCTATATTAACACATAAATGCAAGAAGAAGATTGAAGAATCTGCAGCCATCAAAATTCAAACAACATTTAGAGGTTACCTTGCAAGGAAAGCTTTGAAGGCATTGAAGGGAATTGTGAAGCTTCAAGCTATCATTCGTGGCAAAGCTGTAAGACGACAAGCTATGAATACTCTGAAGTGCTTACAATCCATTGTGAGTATCCAGTCACAGGTCATTGCAGGGAAACTCCAGAATGTTGAAGGAAGACGAGATTGTGGTGAATATGAAGAGATGCAAGAATCAAGAGACAAGATCATAAGGATGGACTCAAACAGCGAAAGAAAGTGGGATCACAACATTTTAATGAAGAAAGAGGTAGATTCCTCTGGCATAAGCAAGAAAGAAGCTGCTACTATGAAAGAAAAAGTAAAAGAATACTCATATAACCATAGGAAATCGGCTGAATCAGACAGAAAGAAAATAAATGGAAGATGGAGGTACTGGATGGAGCAGAGGGTAGACATGCAACATTCTAAGAGTAAAGAACTTGAAGATTTAGACTCAGTTTTCAGCTCGCATTGTAGAGCAGTAGAAGATTGTGGAAGAAGACACCTAAAGCTTAGACATATTCAGAAACAAAATGAAGATGAAGGATTAGATTCACCGATACTATCTTCAAGAAACTCTTTTCCTCAAAGTTCAGAGAGAGAAGATTACTCATTTCCAAGATCACCTGCAATTCCAACATACATGGCTGCAACAAAATCAACACAGGCAAAAGTAAGATCAACGAGTACCCCAAAAACAAGGATAGGAGGGAATTGGGACATAAACTATGATTGCTATTCACCGTGCAAATCTCCTAGCTTAAAAGGCCTCTCAAGGCCTTGA 1197 0.391 MAKKGWFSRIERIFTHSTQEKKEKRRKWVFGRLKNKRLSLIEAPPPLKETRLSEAEEEHNRHALTIAIASAETALTAAQVAVEVVKFQSVHQCKGKLEEVKHVKTKYDASILTHKCKKKIEESAAIKIQTTFRGYLARKALKALKGIVKLQAIIRGKAVRRQAMNTLKCLQSIVSIQSQVIAGKLQNVEGRRDCGEYEEMQESRDKIIRMDSNSERKWDHNILMKKEVDSSGISKKEAATMKEKVKEYSYNHRKSAESDRKKINGRWRYWMEQRVDMQHSKSKELEDLDSVFSSHCRAVEDCGRRHLKLRHIQKQNEDEGLDSPILSSRNSFPQSSEREDYSFPRSPAIPTYMAATKSTQAKVRSTSTPKTRIGGNWDINYDCYSPCKSPSLKGLSRP 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05070 398 PANTHER IQ-DOMAIN 5-RELATED 1 384 - -
Vivi3g05070 398 Gene3D - 121 172 - -
Vivi3g05070 398 Pfam Protein of unknown function (DUF4005) 333 372 IPR025064 -
Vivi3g05070 398 MobiDBLite consensus disorder prediction 315 347 - -
Vivi3g05070 398 Pfam IQ calmodulin-binding motif 123 142 IPR000048 GO:0005515
Vivi3g05070 398 Pfam IQ calmodulin-binding motif 145 162 IPR000048 GO:0005515
Vivi3g05070 398 FunFam IQ-domain 11 120 171 - -
Vivi3g05070 398 ProSiteProfiles IQ motif profile. 145 172 IPR000048 GO:0005515
Vivi3g05070 398 SMART iq_5 120 142 IPR000048 GO:0005515
Vivi3g05070 398 ProSiteProfiles IQ motif profile. 121 149 IPR000048 GO:0005515
Vivi3g05070 398 MobiDBLite consensus disorder prediction 320 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05070 Vivi-Chr3 99805620 99807923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05070 3 389 IQD Protein Family AT5G13460 41.687 3.21e-77 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05070 - - gmx:100777067 505.368