Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05069 ATGGATCACTCACCCTCACCACTGCCAGTGAAAAAAGAACCCTCAGAACTAGATTCATTGAAGAGAAAATCTCGTTCAGAAAGCAATGATGAAAATAAGAAGAAGAAGCCAGCCCCAAACCTTGATGATATCAAGCCACAAAAGATGAATACTGGTGAGTCCTCGAGAAGCTTATGTGGTATATGCTTTAATTCCAAATCAGATCCTGATATGTTCAAAATCAATACTTGCAACCACTCATTTTGCGTTGATTGCATTTCCAAATACATGGATTCTCAAATAACCAACAAAGTGGTTAAAGTGACTTGTCCAAATCCAAATTGTTATACGAAATTGAAGCCGGAACATTTGGTAAATATCATGTCTAGAGAATTTCTTGATCGATGGGAATTCGCAAAGTATAAGTCTAAAATTCCGTTGGAGCAGAAGACTTATTGTCCATTTGAGGATTGTTCTATTTTGTTGGTGAAAGAGGATTCCGGCGGAGAAGTTGTTGTGACGAGCTGCGAGTGTCCATATTGTCATAGATTATTCTGTGCACAGTGTAGGGTTCCATGGCATGCTGAGAAGAGTTGTGAAGAATTTCAAAATTTGAAAGTTCCTAAACAAGAACAAGAAATTGGAGGGTAA 630 0.381 MDHSPSPLPVKKEPSELDSLKRKSRSESNDENKKKKPAPNLDDIKPQKMNTGESSRSLCGICFNSKSDPDMFKINTCNHSFCVDCISKYMDSQITNKVVKVTCPNPNCYTKLKPEHLVNIMSREFLDRWEFAKYKSKIPLEQKTYCPFEDCSILLVKEDSGGEVVVTSCECPYCHRLFCAQCRVPWHAEKSCEEFQNLKVPKQEQEIGG 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05069 209 MobiDBLite consensus disorder prediction 1 42 - -
Vivi3g05069 209 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 199 IPR031127 GO:0004842|GO:0016567
Vivi3g05069 209 ProSitePatterns Zinc finger RING-type signature. 77 86 IPR017907 -
Vivi3g05069 209 Pfam Zinc finger, C3HC4 type (RING finger) 59 104 IPR018957 GO:0046872
Vivi3g05069 209 SUPERFAMILY RING/U-box 140 197 - -
Vivi3g05069 209 SMART ibrneu5 127 192 IPR002867 GO:0008270
Vivi3g05069 209 ProSiteProfiles Zinc finger RING-type profile. 59 104 IPR001841 -
Vivi3g05069 209 CDD BRcat_RBR_unk 142 195 - -
Vivi3g05069 209 Pfam IBR domain, a half RING-finger domain 129 192 IPR002867 GO:0008270
Vivi3g05069 209 FunFam RBR-type E3 ubiquitin transferase 54 140 - -
Vivi3g05069 209 MobiDBLite consensus disorder prediction 1 55 - -
Vivi3g05069 209 ProSiteProfiles TRIAD supradomain profile. 55 209 IPR044066 -
Vivi3g05069 209 SUPERFAMILY RING/U-box 54 139 - -
Vivi3g05069 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 142 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05069 Vivi-Chr3 99783622 99786586 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05069 52 196 C3H Transcription Factor Family AT2G19610 28.477 1.03e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05069 K11975 - mtr:25481406 258.07