Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05068 ATGGATCACTCACCCTCACCACTGCCAGTGAAAAAAGAACCCTCAGAACTAGATTCATTGAAGAGAAAATCTCGTTCAGAAAGCAATGATGAAAATAAGAAGAAGAAGCCAGCCCCAAACCTTGATGATATCAAGCCACAAAAGATGAATACTGGTGAGTCCTCAAGAAGCTTATGTGGTATATGCTTTAATTCCAAATCAGATCCTGATATGTTCAAAATCAATACTTGCAACCACTCATTTTGCGTTGATTGCATTTCCAAATACATGGATTCTCAAATAACCAACAAAGTGGTTAAAGTGACTTGTCCAAATCCAAATTGTTATACGAAATTGAAGCCGGAACATTTGAAGACTTATTGTCCATTTGAGGATTGTTCTATTTGGTTGGTGAATGAGGATTCCGGCGGAGAAGTTGTTGTGACGAGCTGCGAGTGTCCATATTGTCATAGATTATTCTGTGCGCAGTGTAGGGTTCCATGGCATGAAGAATTGCGAAGAGTTTCAAAATTTGAAAGTTCCTAA 525 0.3867 MDHSPSPLPVKKEPSELDSLKRKSRSESNDENKKKKPAPNLDDIKPQKMNTGESSRSLCGICFNSKSDPDMFKINTCNHSFCVDCISKYMDSQITNKVVKVTCPNPNCYTKLKPEHLKTYCPFEDCSIWLVNEDSGGEVVVTSCECPYCHRLFCAQCRVPWHEELRRVSKFESS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05068 174 MobiDBLite consensus disorder prediction 1 42 - -
Vivi3g05068 174 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 164 IPR031127 GO:0004842|GO:0016567
Vivi3g05068 174 ProSitePatterns Zinc finger RING-type signature. 77 86 IPR017907 -
Vivi3g05068 174 MobiDBLite consensus disorder prediction 1 55 - -
Vivi3g05068 174 ProSiteProfiles TRIAD supradomain profile. 55 174 IPR044066 -
Vivi3g05068 174 ProSiteProfiles Zinc finger RING-type profile. 59 104 IPR001841 -
Vivi3g05068 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 135 IPR013083 -
Vivi3g05068 174 Pfam Zinc finger, C3HC4 type (RING finger) 59 104 IPR018957 GO:0046872
Vivi3g05068 174 SUPERFAMILY RING/U-box 54 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05068 Vivi-Chr3 99725507 99726110 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05068 52 162 C3H Transcription Factor Family AT2G19610 24.648 2.04e-07 47.8