Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05064 ATGTCTCATCCTTCATCTACTTCTCTTTCAAGAAAGAGAAAGTCTCTTTCAGAAGACAGCCATGGTGAAAAGAGAAAGAAAGCAACCACCACTCAATCCTCAAAAAGCATATGCGGTATATGTTTTGATTCTGTAAAAGACTATAAAATCTTCACAAACACTTCATGCAATCACCCCTTTTGTACTAAATGCATATCCAAGTATGTCAAACTTCAAAGAAAACTAAAAGTGGTAAAACTCAGTTGTCCGGATCCAGAATGTTCCTTGGTACTCAAACCACAACAATTTCAATCTATTTTACGTAAAGACCTCATTGTTGAATGGGAATCTGCGATTTGCGAGTCTTCGATTTCTTTGAAGCAAAAGATTTACTGTCCTTATAAGAATTGTTCTCTTATGATGGTGAATGACGGGGTAGAAGTTGTTACAAGTTGCGAATGTCCTTCTTGTCATAGACTATTCTGTGCACAATGTAATGTTCCATGGCACGCTGATATGAATTGCCGGGAATATCGGGAATATCAGAACTCGAAGCCGGTTCAAGAAGAAAAACAATTGGATGAGAAATTTTTGGAGTTGGCTAAAACAAAAAATTGGCAGAAATGTCCAGGATGTTCTATGTATGTCCAGAAAAGGGGCGGATGTAATCACATGTCTTGCAGTACTGGATTTTAA 675 0.3748 MSHPSSTSLSRKRKSLSEDSHGEKRKKATTTQSSKSICGICFDSVKDYKIFTNTSCNHPFCTKCISKYVKLQRKLKVVKLSCPDPECSLVLKPQQFQSILRKDLIVEWESAICESSISLKQKIYCPYKNCSLMMVNDGVEVVTSCECPSCHRLFCAQCNVPWHADMNCREYREYQNSKPVQEEKQLDEKFLELAKTKNWQKCPGCSMYVQKRGGCNHMSCSTGF 224
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05064 224 SMART ibrneu5 106 168 IPR002867 GO:0008270
Vivi3g05064 224 SUPERFAMILY RING/U-box 34 116 - -
Vivi3g05064 224 ProSiteProfiles Zinc finger RING-type profile. 38 83 IPR001841 -
Vivi3g05064 224 FunFam RBR-type E3 ubiquitin transferase 33 119 - -
Vivi3g05064 224 Pfam IBR domain, a half RING-finger domain 113 168 IPR002867 GO:0008270
Vivi3g05064 224 ProSiteProfiles TRIAD supradomain profile. 34 224 IPR044066 -
Vivi3g05064 224 Pfam Zinc finger, C3HC4 type (RING finger) 38 83 IPR018957 GO:0046872
Vivi3g05064 224 SUPERFAMILY RING/U-box 184 221 - -
Vivi3g05064 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 120 IPR013083 -
Vivi3g05064 224 MobiDBLite consensus disorder prediction 1 28 - -
Vivi3g05064 224 SUPERFAMILY RING/U-box 120 173 - -
Vivi3g05064 224 Gene3D - 166 224 - -
Vivi3g05064 224 MobiDBLite consensus disorder prediction 12 28 - -
Vivi3g05064 224 CDD BRcat_RBR_unk 120 171 - -
Vivi3g05064 224 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 21 220 IPR031127 GO:0004842|GO:0016567
Vivi3g05064 224 ProSitePatterns Zinc finger RING-type signature. 56 65 IPR017907 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi3g05064 Vivi-Chr3 99446969 99447963 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05064 38 220 C3H Transcription Factor Family AT2G19610 28.125 1.89e-20 87.0