Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05063 ATGACTCGGTCTAGTACTTCTCTTTCAACAAATAATCATGCAAATGCAATTCAAAATACAATGAAGAGAAAATCGCTTGCAGCAGATAGCGACAATGAAAAGAAGAAAACAAAGAAAGCAACAACTAGTTATCAACGTAAATCCTCCAAAAGTTTCAACTGTGGTATATGCTTTGATTCTGTAACAGTCTCTAAAATCTTCACAAACACTTCATGCAACCATCCATTTTGTACTAACTGCATATCCAAGTACGTGAATGTTCAAATAAACAAAAATGCTGCAAAAGTGACTTGTCCAAATCCGGAATGTTCTGTGGAACTGAAACCACAACATTTGCAATCCAGTTTACCTAATCAAGTCATTGTTGAATGGGAATCTGCAATTTGCGAGTCTTCGATTTCTTTGAAGCAAAAGATTTACTGTCCTTACAAGAATTGTTCTGTTATGTTGGTGAATGACGGGGTAGAAGTAGTTACAAGTTGTGAATGTCCTTCTTGTCATAGGCTATTCTGTGCACAATGTAAGGTTCCATGGCACGCAAACATGAGTTGTGGGAGATTTCAGAATTCGACTAAGGTTCGAGATGAAAAAGAATTGAATGAGAAATTTATGGACTTGGCTAAAAGAAAGAAGTGGCAGACATGTCCCAAATGTTCTATGCATGTTCAGAGAAATGGTGGATGTGAACATATATCATGCAGGTGTGGATGTAGCTTCTGCTACAAGTGTGGGAAGGATTGGAAGCATGGACATGTATGCAATAGATCTTAA 771 0.3735 MTRSSTSLSTNNHANAIQNTMKRKSLAADSDNEKKKTKKATTSYQRKSSKSFNCGICFDSVTVSKIFTNTSCNHPFCTNCISKYVNVQINKNAAKVTCPNPECSVELKPQHLQSSLPNQVIVEWESAICESSISLKQKIYCPYKNCSVMLVNDGVEVVTSCECPSCHRLFCAQCKVPWHANMSCGRFQNSTKVRDEKELNEKFMDLAKRKKWQTCPKCSMHVQRNGGCEHISCRCGCSFCYKCGKDWKHGHVCNRS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05063 256 ProSiteProfiles Zinc finger RING-type profile. 54 99 IPR001841 -
Vivi3g05063 256 MobiDBLite consensus disorder prediction 1 42 - -
Vivi3g05063 256 FunFam RBR-type E3 ubiquitin transferase 49 135 - -
Vivi3g05063 256 ProSitePatterns Zinc finger RING-type signature. 72 81 IPR017907 -
Vivi3g05063 256 Pfam IBR domain, a half RING-finger domain 129 184 IPR002867 GO:0008270
Vivi3g05063 256 Pfam IBR domain, a half RING-finger domain 206 253 IPR002867 GO:0008270
Vivi3g05063 256 ProSiteProfiles TRIAD supradomain profile. 50 256 IPR044066 -
Vivi3g05063 256 Pfam Zinc finger, C3HC4 type (RING finger) 54 99 IPR018957 GO:0046872
Vivi3g05063 256 Gene3D - 182 256 - -
Vivi3g05063 256 CDD Rcat_RBR_unk 211 247 - -
Vivi3g05063 256 SMART ibrneu5 122 184 IPR002867 GO:0008270
Vivi3g05063 256 SMART ibrneu5 201 253 IPR002867 GO:0008270
Vivi3g05063 256 SUPERFAMILY RING/U-box 49 132 - -
Vivi3g05063 256 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 24 247 IPR031127 GO:0004842|GO:0016567
Vivi3g05063 256 SUPERFAMILY RING/U-box 136 189 - -
Vivi3g05063 256 CDD BRcat_RBR_unk 136 187 - -
Vivi3g05063 256 SUPERFAMILY RING/U-box 202 253 - -
Vivi3g05063 256 MobiDBLite consensus disorder prediction 1 25 - -
Vivi3g05063 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 136 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05063 Vivi-Chr3 99442636 99443537 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05063 53 244 C3H Transcription Factor Family AT2G19610 27.586 2.26e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05063 K11975 - vvo:131630288 441.425