Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi3g05062 | ATGAAAAACGAACGCACTCCTTCACGTTCAGAAAACGGAATGCAAAATTCAAGGAAGAGAAAATCTCTTTCAGAAAACAACGATGATGAAAGCAGAAAGAAAGCAACCACTAGTTGCCACCTTCAACCTCTTTCAGAAAAAGAATCGCAAAACGCAACCACTAGAAAATCTCTTTCAGAAGACCGTTATGAAAAGAACAAGAAGACAAACAAAGCAACTACCAGTCGTGAACCCTCAAAAAGAAGATGCGGTATATGTTTTGATTCTGTAATAGACTCTGAAATCTTCAAAATTCCTTTATGCAACCATCCATTTTGTACTAACTGCATATCCAAGTATGTCAAACTTCAAAGAAAAGACAAAGTGGTGAAACTCAATTGTCCAGATCCACAATGTTCTTTGGAACTCAAACCAGAACACTTGGAATCCATTTTACCTAAAGACCTCATTGTTGAATGGGAATCTGCAATTTACGAGTCTTCGATTTCTTTGAAGCAAAAGATTTACTGTCCTTATAAGAATTGTTCTCTTATGTTGGTGAATGACGGGGAAGAAGTTGTTACAAGTTGTGAATGTCCTTCTTGTCATAGACTATTCTGTGCTCAATGTAAGGTTCCATGGCACGTTGATATGAGTTGCCGGAGATTTCAGAAGTCGACAAAGGGTCGAGATGTAAAAGAATTGGATGAGAAATTTATGGAATTGGCTAAAAGAAAAAAGTGGCAAAGATGTCCCAAATGTTCTATGCATGTTCAAAGAAATGGTGGATGTGAACACATTTCGTGCAGGTGTGGATGTAACTTCTGCTACAAGTGTGGTAAGGATTGGATTCATGGTCATATATGCAAGCATTCGCGGTAA | 861 | 0.3786 | MKNERTPSRSENGMQNSRKRKSLSENNDDESRKKATTSCHLQPLSEKESQNATTRKSLSEDRYEKNKKTNKATTSREPSKRRCGICFDSVIDSEIFKIPLCNHPFCTNCISKYVKLQRKDKVVKLNCPDPQCSLELKPEHLESILPKDLIVEWESAIYESSISLKQKIYCPYKNCSLMLVNDGEEVVTSCECPSCHRLFCAQCKVPWHVDMSCRRFQKSTKGRDVKELDEKFMELAKRKKWQRCPKCSMHVQRNGGCEHISCRCGCNFCYKCGKDWIHGHICKHSR | 286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi3g05062 | 286 | ProSiteProfiles | TRIAD supradomain profile. | 79 | 286 | IPR044066 | - | |
| Vivi3g05062 | 286 | Pfam | IBR domain, a half RING-finger domain | 159 | 213 | IPR002867 | GO:0008270 | |
| Vivi3g05062 | 286 | Pfam | IBR domain, a half RING-finger domain | 235 | 281 | IPR002867 | GO:0008270 | |
| Vivi3g05062 | 286 | SUPERFAMILY | RING/U-box | 230 | 283 | - | - | |
| Vivi3g05062 | 286 | MobiDBLite | consensus disorder prediction | 14 | 36 | - | - | |
| Vivi3g05062 | 286 | CDD | BRcat_RBR_unk | 165 | 216 | - | - | |
| Vivi3g05062 | 286 | Gene3D | - | 210 | 286 | - | - | |
| Vivi3g05062 | 286 | SUPERFAMILY | RING/U-box | 81 | 160 | - | - | |
| Vivi3g05062 | 286 | FunFam | RBR-type E3 ubiquitin transferase | 78 | 164 | - | - | |
| Vivi3g05062 | 286 | ProSiteProfiles | Zinc finger RING-type profile. | 83 | 128 | IPR001841 | - | |
| Vivi3g05062 | 286 | SMART | ibrneu5 | 226 | 282 | IPR002867 | GO:0008270 | |
| Vivi3g05062 | 286 | SMART | ibrneu5 | 151 | 213 | IPR002867 | GO:0008270 | |
| Vivi3g05062 | 286 | MobiDBLite | consensus disorder prediction | 37 | 52 | - | - | |
| Vivi3g05062 | 286 | MobiDBLite | consensus disorder prediction | 1 | 75 | - | - | |
| Vivi3g05062 | 286 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 77 | 164 | IPR013083 | - | |
| Vivi3g05062 | 286 | SUPERFAMILY | RING/U-box | 165 | 218 | - | - | |
| Vivi3g05062 | 286 | CDD | Rcat_RBR_unk | 240 | 276 | - | - | |
| Vivi3g05062 | 286 | MobiDBLite | consensus disorder prediction | 53 | 75 | - | - | |
| Vivi3g05062 | 286 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 21 | 278 | IPR031127 | GO:0004842|GO:0016567 | |
| Vivi3g05062 | 286 | ProSitePatterns | Zinc finger RING-type signature. | 101 | 110 | IPR017907 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi3g05062 | Vivi-Chr3 | 99343716 | 99344711 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi3g05062 | 37 | 273 | C3H Transcription Factor Family | AT2G19610 | 27.016 | 1.75e-22 | 94.4 |