Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05061 ATGTCTTCTCCTTCTTCTACTTCTCTTTCAACAAAGAGAAAGAAAGCAACCACCACTCAGTCCTCAAAAAGCATATGCGGTATATGCTTTGATTCTGTAAGAGTCTCTAAAATCTTCACAAACACTTCATGCAACCATCCCTTTTGTACTAACTGCATATCCAAGTATGTCAAACTTCAAAGAAAAGACAAAGCGGTGAAACTCTACTGTCCAGATCCACAATGTTCTTTGAAACTCAAACCACAACATTTGCAATCCATTTTACCTAAAGAGCTTATTGTTGAATGGGAATCTGCAATTTATGAGTCTTCGATTTCTTTGAAGCAAAAGATTTACTGTCCTTATAAGAATTGTTCTCTTATGATGGTGAACGACGGGGTAGAAGTTGTTACAAGTTGTGAATGTCCTTCTTGTCATAGGCTATTCTGTGCACAGTGTAAGGTTCCATGGCACGCAGACATGAGTTGCCGGAGATTTCAGAAGTCGACAAAGGGTCAACATGAAAAACAATTGGATGAGAAATTTATGGAATTGGCTAAAAGAAAAAAGTGGCAGAAATGTCCCAAATGTTCTATGCATGTTCAGAGAAATGGTGGATGTGAACACATAGCGTGCAGGTGTGGATGTAACTTCTGCTACAAGTGTGGTAAGGATTGGATTCATGGACATATATGCAAATATTCGCGGTAA 690 0.3855 MSSPSSTSLSTKRKKATTTQSSKSICGICFDSVRVSKIFTNTSCNHPFCTNCISKYVKLQRKDKAVKLYCPDPQCSLKLKPQHLQSILPKELIVEWESAIYESSISLKQKIYCPYKNCSLMMVNDGVEVVTSCECPSCHRLFCAQCKVPWHADMSCRRFQKSTKGQHEKQLDEKFMELAKRKKWQKCPKCSMHVQRNGGCEHIACRCGCNFCYKCGKDWIHGHICKYSR 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05061 229 SMART ibrneu5 169 225 IPR002867 GO:0008270
Vivi3g05061 229 SMART ibrneu5 94 156 IPR002867 GO:0008270
Vivi3g05061 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 107 IPR013083 -
Vivi3g05061 229 Pfam IBR domain, a half RING-finger domain 178 224 IPR002867 GO:0008270
Vivi3g05061 229 Pfam IBR domain, a half RING-finger domain 101 156 IPR002867 GO:0008270
Vivi3g05061 229 FunFam RBR-type E3 ubiquitin transferase 21 107 - -
Vivi3g05061 229 SUPERFAMILY RING/U-box 108 161 - -
Vivi3g05061 229 CDD Rcat_RBR_unk 183 219 - -
Vivi3g05061 229 Pfam Zinc finger, C3HC4 type (RING finger) 26 71 IPR018957 GO:0046872
Vivi3g05061 229 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Vivi3g05061 229 ProSiteProfiles Zinc finger RING-type profile. 26 71 IPR001841 -
Vivi3g05061 229 SUPERFAMILY RING/U-box 23 103 - -
Vivi3g05061 229 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 220 IPR031127 GO:0004842|GO:0016567
Vivi3g05061 229 SUPERFAMILY RING/U-box 172 225 - -
Vivi3g05061 229 ProSiteProfiles TRIAD supradomain profile. 22 229 IPR044066 -
Vivi3g05061 229 CDD BRcat_RBR_unk 108 159 - -
Vivi3g05061 229 Gene3D - 154 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05061 Vivi-Chr3 99335937 99336761 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05061 26 216 C3H Transcription Factor Family AT2G19610 29.208 2.56e-22 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05061 K11975 - vvo:131630285 467.618