Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05054 ATGATGAAGTGTGAAATGGGAATTCTTTCTTCTCATGCACCATTTGTTGAAACCAATTGGTTTTTGGAAGATAGAAGCTATAACATTAACAGGAGAGCAACAAAATGGACTGCATCAGAGAACAAACTGTTTGAGAATGCTCTTGCTGTTTATGATAAAGATACGCCGGATCGGTGGGCTAAGGTTGCTGAAATGATACCTGGAAAATCTGTTGTTGATGTGATGAATCAGTATAAGGAATTGGAAGTTGATGTTTGTAATATTGAAGCTGGTTTGGTTCCGATTCCGGGTTATAGTACTAGTACTAGTACTGCTTCGCCTTTTACCTTGGATTGGGTGAGTTCTTCTGGTTATGATGGTTTTAGAGGGATCAATTCTAAGAGAAGTGGTTCCGGTAGATCTCCGGATCAGGAGAGGAAGAAAGGCGTGCCGTGGACCGAAGAAGAACACAAGTTATTTCTATTGGGTCTGAAAAAGTATGGAAAAGGTGATTGGAGAAACATATCAAGAAACTTTGTGATAACAAGAACACCAACGCAAGTCGCAAGCCATGCTCAAAAATATTTCATCCGACAACTCTCCGGCGGCAAAGACAAAAGAAGAGCAAGCATCCATGACATAACAACCGTTAATCTCACAGAAACTTCAAAAGCATCTCCAACTTCAGAAAACACCAAAACATCCACTTCACCGCACAATCATAGCCAATCCATGAACATCATCAACAAATATTCCACCGCGAACACCGCATCCGAGATGCATTTTCAGCCGGCTATGATCACAGCATTCAACCCTTCACATGAACAAGTTTTCATGTCTCCTTACGGAGTTAATATGAATAGAAATCCTCTTCATGAGTCTTCTTACTTCGGAACTCAAACACAAAACATGGTCTTTCAAATGCAACCTTCTCAACAACAAAACTATTCACATGCATGA 939 0.4036 MMKCEMGILSSHAPFVETNWFLEDRSYNINRRATKWTASENKLFENALAVYDKDTPDRWAKVAEMIPGKSVVDVMNQYKELEVDVCNIEAGLVPIPGYSTSTSTASPFTLDWVSSSGYDGFRGINSKRSGSGRSPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETSKASPTSENTKTSTSPHNHSQSMNIINKYSTANTASEMHFQPAMITAFNPSHEQVFMSPYGVNMNRNPLHESSYFGTQTQNMVFQMQPSQQQNYSHA 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05054 312 MobiDBLite consensus disorder prediction 213 236 - -
Vivi3g05054 312 FunFam transcription factor MYB1R1 143 194 - -
Vivi3g05054 312 MobiDBLite consensus disorder prediction 124 144 - -
Vivi3g05054 312 FunFam Transcription factor SRM1 29 95 - -
Vivi3g05054 312 NCBIfam myb-like DNA-binding domain, SHAQKYF class 140 192 IPR006447 GO:0003677
Vivi3g05054 312 SMART sant 32 84 IPR001005 -
Vivi3g05054 312 SMART sant 141 191 IPR001005 -
Vivi3g05054 312 Gene3D - 29 95 - -
Vivi3g05054 312 SUPERFAMILY Homeodomain-like 28 82 IPR009057 -
Vivi3g05054 312 Gene3D - 143 193 - -
Vivi3g05054 312 ProSiteProfiles Myb-like domain profile. 28 82 IPR001005 -
Vivi3g05054 312 ProSiteProfiles Myb-like domain profile. 137 189 IPR001005 -
Vivi3g05054 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 193 IPR017930 -
Vivi3g05054 312 CDD SANT 144 189 IPR001005 -
Vivi3g05054 312 SUPERFAMILY Homeodomain-like 139 192 IPR009057 -
Vivi3g05054 312 CDD SANT 35 81 IPR001005 -
Vivi3g05054 312 ProSiteProfiles SANT domain profile. 145 193 IPR017884 -
Vivi3g05054 312 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 31 293 IPR043363 -
Vivi3g05054 312 Pfam Myb-like DNA-binding domain 144 189 IPR001005 -
Vivi3g05054 312 Pfam Myb-like DNA-binding domain 35 80 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05054 Vivi-Chr3 99094432 99096913 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi3g05054 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05054 - - cam:101514273 469.159