Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05051 ATGAGTATACATGCACCTCTTGAAGAGCCCCTTTTGAAGGATGAAGCTAGTGTAAGCAACAACAATTCCGATTCTAATGAGATTTTAACAAGTTATTCCAAGGCTGGATTTTTCAGCATTCTTACCTTCTCATGGATGAGTCCACTAATAACATTAGGAAGTAACAAGACTTTAAACCATGAAGATCTTCCACTTCTTTCTGCCAATGACAGTGCTCATGGAACTTTTTCAACTTTTAGAGAAAAGCTTGAGTTGGAATGTGGTAATGTTAGGACTGTGACAACTATTAAACTCGCCAAGGTGCTGCTCTTATCGACATGGAAAGGGATTCTTATATCTGGCGTATATGAATTCGTGTACGTATGTGCTACTTATGTAGGACCCTACCTTATTGACAACCTTGTTCAATATCTCAATGATGAAAGCAAGGCTAAAAATGAAGGATATGTTTTGGCTACGATGTTTGTTGTGGCGAAACTTGTTGAGTGTCTCTCGCAAAGGCAGTGGATGTTTACGTTTCAACAGGTTGGCGTTAGGATGCAATCAATGATTGTGTCAATGATCTATGCTAAAGGTTTGACACTTTCGTGTAAATCAAAAGAGGAGCATAGCAGTGGCGAAATCATCAACTTAATGACAGTTGATGCTGAGAGGATAGGTGAATTTTGTTGGTATATGCATGATCTATGGATGGCTGTTCTGCAAGTTTCTCTGGCTTTGTTTATTCTTCATAGAAGCGTCGGGGTTGCTTCAGTAGCTACTTTTGCTGCAACTGTTATTGTGATGTTGCTAAACCTTCCTATGGCATCCTTACAAGAGAAGTTCCAAGCTAAGTTAATGGAGTTCAAGGATAAAAGAATGAAGGCAACGACTGAGATTCTAACGAACATGAGGATTCTTAAACTTCAAGCGTGGGAGATGAAGTTCTTATCAAAGATTATTCAGCTTAGGAAGTTAGAGGAGACGTGGCTAAAGAAGTTTCTTGTTGGTACAGCAATTGTTAGATTTCTCTTCTTTAACGCCCCAACGTTTGTTGCGGTGATCACTTTCGGTGCTTGTGTTCTTCTAGGCATTCCACTTGAAACAGGAAAGATCTTATCCGCTCTTGCAACGTTCAGAATTCTTCAAATGCCTATCTATAACTTCCCTGACACGATTTCGGTGATGGCAGAAACCAAGGTGTCCCTCGATAGGGTTGTTGCTTTTCTTCGTCTAGATGATTTACAGACTGGTGTAGTGGAGAAGTTTTCGCGAGGTAGTTCTGATATAGCAATTGAAATAGTAGATGGAAATTTCTCTTGGGAGTTATCTTCTGATTATACTACGTTGAAAAACATAAATCTTAGAGTTTTACACGGTACGAGGGTCGCTGTTTGTGGCACTGTTGGATCGGGCAAGTCTAGTTTACTTTCTTGTATAATAGGCGAAATACCGAAGATATCTGGACTTGTGAAGGTGTGTGGAAAAAAGGCTTTTGTTGCTCAATCAGCATGGATACAAAGTAGCAAGATCGAAGAGAACATACTATTCGGGAAAGAGATGGATAGAGAAAAATACGAGAGGGTGCTAGAAGCATGTTCTTTGAAGAAAGACCTGGAGGTTTTACCATTTGGTGATCAGACCATTATTGGTGAGAAGGGAATTAATTTGAGTGGTGGACAGAAAGAAAGAGTACAAATCGCCCGTGCTCTTTACCAAGATGCCGATATATATCTACTCGATGACCCCTTTAGTGCTGTTGATGCTCATACAGGTTCCCATCTCTTTAAGGAGTGTTTGCTTGGCCTTTTGAAAACAAAAACTGTGATATACATAACACATCAAGTCGAGTTCTTACCTGACGCGGATCTGATACTTGTCATGAAAGAAGGAAGGATAACTCAATCAGGAAAATACAAGGGCATTCTTACATCAGGAACCGATTTTATGGAACTTCTTTTAATTATAGGCGCGCATAGAAAAGCATTGACTTCGGTTAAGTCTTTAGAGAGAAGGCCTACATTTAAAACATCGAGTATTACCGGAGAAGACACAGGTTCATTACGCGATTTTGAACATGAGCAAGAAGTGGAAAACATAGAGGATCGAAACGGAAAGCTTGGTGAAACAATTGTGGTACCGAAAGGTCAGCTTGTTCAAGACGAAGAACGTGAAAAGGGAAGTGTTGGGTTGAAAGTGTTCTGGAAATACATAACAGCTTATGGAGGAGCTCTTGTACCTTTCCTATTTCTTTCACAGATACTCACTGTGGTTTTACAAATTGCAAGCAACTATTGGATGGCTTTGGAAACTCCTGTTTCAGCAACTGCGGAACCTGATATTGGAAGCTTTACTCTGATGGTTGTCTATATTTCTTTGGCAATAGGAAGTTCCTTTACCACCCTTGCCAGAGCAGTTCTTGCTGCGATAGCAGGATACAAGACCGCCACCATGCTCTTCAATCAAATGCATTTGAGCTTCATTCGCGCTCCAATGTCATTTTTTGATTCCACCCCAAGTGGAAGAATTCTTAATAGAGCTTCGACAGACCAAAGTACAGTAGATATGAGTATTTCAAGTCTAGCGTGGGGACTTACCTACAATCTGGTTCAGCTCTTGGGAATTATTGCTGTGATGTCTCAAGCTGCATGGCAGGTGTTCATAGTATTGATTCCTGTCATGGCAGCATGCATATGGTACCAGCTGTTCTACTCAGCATCAGCACGGGAATTGGCGCGATTAACTGGTATATGCCAAGCTCCGGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAACCTGTTTTGAGCAAGAATCAAGATTTAATGAAACGAATATGGAACTGATAGACAAATACTCCCAACCTAAATCATACAGTGCCAGCGCGATGGAATGGTTGAGTTTCAGATTGGATCTTTTATCCTCTACCTTATTTGCTTTCTGCTTGGTTTTCTTAGTATCTTTTCCAAGTTCAATATTCGATCCTCGCATTGCGGGATTGGTTGTGACATATGGGATTAATATAAATGCTGTACAATCTAGTTTGATTTCGATTCTTTGCAATTTGGAGAACAAAATTATATCAGTAGAAAGAATACTTCAGTACACCTCCATCCCAAGTGAAGCACCTCTTGTAATAAAAGAAAATCAACCAGATCATTCTTGGCCCTCATTCGGAGAGGTTCATATCCACGATTTACAGGTCCAATATGCCCCTCACTTGCCTCTTGTTTTACGCGGACTTACATGCACTTTTACTGCCGGAGCAAAAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAAACAACTCTAGTGCAAGCACTCTTTCGACTTGTTGAGCCTGTTGCAGGAAAAATATCAATAGATAGCATCAACATCTCATCGATTGGAATCCATGATTTACGGTCTAGATTAAGTATAATTCCTCAGGATCCAACAATGTTTGAAGGGACTGTAAGAAGTAACCTCGACCCGTTGGAAGAGTACACAGATGAACAAATATGGGAGGCTCTTGGTATGTGCCAACTTGGAGATGAAGTGAGAAAGAAAGAAGGAAAGCTTGACTCTCAAGTAACTGAGAATGGAGAAAACTGGAGCATGGGTCAAAGACAGTTGGTTTGCCTCGGCCGAGTTTTACTTAAGAAAAGCAAGATATTAGTGCTTGACGAAGCGACTGCATCAGTTGATACAGCGACCGATAATATTATTCAGCAGACAGTTAAGCAACATTTCTCTGATTCCACAGTCATTATCATTGCTCACAGAATAACTTCCATACTCGATAGCGACATGGTTTTGTTTCTCAGCGATGGACTTGTTGAGGAATATGATTCGCCGAAGAAGTTGCTTAAGGATAAATCGTCGTCTCTTGCTCAATTGGTTGCAGAATACACAAGGAGATCAAACACTGGTTTTGGAAGTTGA 3915 0.4046 MSIHAPLEEPLLKDEASVSNNNSDSNEILTSYSKAGFFSILTFSWMSPLITLGSNKTLNHEDLPLLSANDSAHGTFSTFREKLELECGNVRTVTTIKLAKVLLLSTWKGILISGVYEFVYVCATYVGPYLIDNLVQYLNDESKAKNEGYVLATMFVVAKLVECLSQRQWMFTFQQVGVRMQSMIVSMIYAKGLTLSCKSKEEHSSGEIINLMTVDAERIGEFCWYMHDLWMAVLQVSLALFILHRSVGVASVATFAATVIVMLLNLPMASLQEKFQAKLMEFKDKRMKATTEILTNMRILKLQAWEMKFLSKIIQLRKLEETWLKKFLVGTAIVRFLFFNAPTFVAVITFGACVLLGIPLETGKILSALATFRILQMPIYNFPDTISVMAETKVSLDRVVAFLRLDDLQTGVVEKFSRGSSDIAIEIVDGNFSWELSSDYTTLKNINLRVLHGTRVAVCGTVGSGKSSLLSCIIGEIPKISGLVKVCGKKAFVAQSAWIQSSKIEENILFGKEMDREKYERVLEACSLKKDLEVLPFGDQTIIGEKGINLSGGQKERVQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLGLLKTKTVIYITHQVEFLPDADLILVMKEGRITQSGKYKGILTSGTDFMELLLIIGAHRKALTSVKSLERRPTFKTSSITGEDTGSLRDFEHEQEVENIEDRNGKLGETIVVPKGQLVQDEEREKGSVGLKVFWKYITAYGGALVPFLFLSQILTVVLQIASNYWMALETPVSATAEPDIGSFTLMVVYISLAIGSSFTTLARAVLAAIAGYKTATMLFNQMHLSFIRAPMSFFDSTPSGRILNRASTDQSTVDMSISSLAWGLTYNLVQLLGIIAVMSQAAWQVFIVLIPVMAACIWYQLFYSASARELARLTGICQAPVIQHFSETISGSTTITCFEQESRFNETNMELIDKYSQPKSYSASAMEWLSFRLDLLSSTLFAFCLVFLVSFPSSIFDPRIAGLVVTYGININAVQSSLISILCNLENKIISVERILQYTSIPSEAPLVIKENQPDHSWPSFGEVHIHDLQVQYAPHLPLVLRGLTCTFTAGAKTGIVGRTGSGKTTLVQALFRLVEPVAGKISIDSINISSIGIHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALGMCQLGDEVRKKEGKLDSQVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQHFSDSTVIIIAHRITSILDSDMVLFLSDGLVEEYDSPKKLLKDKSSSLAQLVAEYTRRSNTGFGS 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05051 1304 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 118 391 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05051 1304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 646 IPR027417 -
Vivi3g05051 1304 SUPERFAMILY ABC transporter transmembrane region 727 1040 IPR036640 GO:0005524|GO:0016020
Vivi3g05051 1304 SUPERFAMILY ABC transporter transmembrane region 105 403 IPR036640 GO:0005524|GO:0016020
Vivi3g05051 1304 FunFam ABC transporter C family member 5 705 1039 - -
Vivi3g05051 1304 CDD ABC_6TM_ABCC_D2 739 1033 IPR044726 GO:0140359
Vivi3g05051 1304 Gene3D - 408 661 IPR027417 -
Vivi3g05051 1304 Gene3D ABC transporter type 1, transmembrane domain 76 407 IPR036640 GO:0005524|GO:0016020
Vivi3g05051 1304 FunFam ABC transporter C family member 5 410 660 - -
Vivi3g05051 1304 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 425 648 IPR003439 GO:0005524
Vivi3g05051 1304 SMART AAA_5 1084 1276 IPR003593 GO:0016887
Vivi3g05051 1304 SMART AAA_5 452 625 IPR003593 GO:0016887
Vivi3g05051 1304 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1058 1292 IPR003439 GO:0005524
Vivi3g05051 1304 Gene3D ABC transporter type 1, transmembrane domain 704 1039 IPR036640 GO:0005524|GO:0016020
Vivi3g05051 1304 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 741 1021 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05051 1304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1049 1283 IPR027417 -
Vivi3g05051 1304 Pfam ABC transporter 1076 1223 IPR003439 GO:0005524
Vivi3g05051 1304 CDD ABC_6TM_ABCC_D1 112 399 IPR044746 GO:0140359
Vivi3g05051 1304 CDD ABCC_MRP_domain1 425 625 - -
Vivi3g05051 1304 CDD ABCC_MRP_domain2 1056 1276 - -
Vivi3g05051 1304 Pfam ABC transporter 443 577 IPR003439 GO:0005524
Vivi3g05051 1304 FunFam ABC transporter C family member 10 94 407 - -
Vivi3g05051 1304 Pfam ABC transporter transmembrane region 741 984 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05051 1304 Pfam ABC transporter transmembrane region 112 378 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05051 1304 FunFam ABC transporter C family member 3 1041 1293 - -
Vivi3g05051 1304 Gene3D - 1041 1294 IPR027417 -
Vivi3g05051 1304 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 32 1292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05051 Vivi-Chr3 98950484 98956052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05051 425 674 Calmodulin-binding Proteins AT2G36910 29.213 1.62e-26 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05051 - K05666 gmx:106794105 1996.48