Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05048 ATGGCCAACCACTCTTCTGTAGGTCCTCCTTTGACTGCCATTGATAGATTCTTATGTGGTCAAAGAAGCCATTTCCCTCAAAACATTGATGATGAAAACTTTTGTAGCTTTGGTGCTTCATCAACCTATAGTTATATGTGGCCTAATAGTAACAATATGATGACTCAAGAAGGTGGCTTTGTTGATCATCTATTGGGAGATGGAGAGGTGATGAATTGGACACAACAAATTCCTTCATTGTGTGTGGAGAAAGAAGATGTCATCAATGGATTAGGGAATGGTGGTGCATCAAAAGTGGTGGCAAAAAGACCTAAGAAAGTTTCTTCTCTTTCTTTGATCAAAGGACAGTGGAGTGATGAAGAAGACAGGAAATTGTTGAAGTTGGTGAAGCTATATGGTGTAAGAAAATGGTCTCAAATAGCTGAGAAGTTGGAAGGAAGAGCTGGAAAGCAGTGTAGGGAGAGATGGCAAAATCATCTTAGGCCTGATATTAAAAAAGATAGTTGGAGCGAGGAAGAAGAGAAGATACTAGTAGAATGTCATGGCAAGATGGGAAACCGATGGGCCGAAATCGCGAAGAAAATTCCAGGAAGAACTGAAAATGCAATCAAGAATCATTGGAATGCAACTAAAAGGAGACAAAATTCAAAGAGAAAGAACAAAAGGCCTCAAACCAAAGATGGTAAACCACAATCCTCTATTCTTCAAGACTATATCAAAACCCTAACTCAAAAACCATCCACAACCACTTCATCCATCTCTGAGGACCCTTCCATGGACCAATCTCACCTTGTTTTTCCTAACATGTTTCATGAAAACTCATCGTCATCGTCACTCATAGCTGAATCTTACGACGATGAACTTCTCTTCATGCAACAACTTTTCAAGGTGAATAGTAATGTTGATCCTGTACTTAACCAATACTATAAGAACCAATCTACTAGAAATCAGATTCTCTCTGATGTTTCACCTAACAACATGTATTATCCTTACATTTCTCCAATGCTGAATGGATCCCAAAACGAGAATAATATCGAGTTCCACCTCGGAAACATGAATCTTTCAGATGGAAACATGGAGTTGGTTTCTTCTGCTCAGTTTTTCTAA 1107 0.3884 MANHSSVGPPLTAIDRFLCGQRSHFPQNIDDENFCSFGASSTYSYMWPNSNNMMTQEGGFVDHLLGDGEVMNWTQQIPSLCVEKEDVINGLGNGGASKVVAKRPKKVSSLSLIKGQWSDEEDRKLLKLVKLYGVRKWSQIAEKLEGRAGKQCRERWQNHLRPDIKKDSWSEEEEKILVECHGKMGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSKRKNKRPQTKDGKPQSSILQDYIKTLTQKPSTTTSSISEDPSMDQSHLVFPNMFHENSSSSSLIAESYDDELLFMQQLFKVNSNVDPVLNQYYKNQSTRNQILSDVSPNNMYYPYISPMLNGSQNENNIEFHLGNMNLSDGNMELVSSAQFF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05048 368 MobiDBLite consensus disorder prediction 210 224 - -
Vivi3g05048 368 FunFam Transcriptional activator Myb isoform A 113 166 - -
Vivi3g05048 368 Gene3D - 113 165 - -
Vivi3g05048 368 ProSiteProfiles Myb-like domain profile. 109 160 IPR001005 -
Vivi3g05048 368 PANTHER MYB PROTEIN-RELATED 99 232 - -
Vivi3g05048 368 MobiDBLite consensus disorder prediction 199 234 - -
Vivi3g05048 368 ProSiteProfiles Myb-like domain profile. 161 211 IPR001005 -
Vivi3g05048 368 Gene3D - 167 235 - -
Vivi3g05048 368 SUPERFAMILY Homeodomain-like 111 207 IPR009057 -
Vivi3g05048 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 164 IPR017930 -
Vivi3g05048 368 CDD SANT 168 211 IPR001005 -
Vivi3g05048 368 SMART sant 165 213 IPR001005 -
Vivi3g05048 368 SMART sant 113 162 IPR001005 -
Vivi3g05048 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 215 IPR017930 -
Vivi3g05048 368 Pfam Myb-like DNA-binding domain 117 175 - -
Vivi3g05048 368 CDD SANT 117 160 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05048 Vivi-Chr3 98805996 98807753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05048 7 295 MYB Transcription Factor Family AT5G58850 44.444 8.59e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi3g05048 Myb_DNA-bind_6 6.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05048 K09422 - gmx:100786295 350.517