Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05036 ATGAAGCTCTCACTCTTCAGAAAAAAAGATTCGTCGAAACAACTTTCCTCCCATACCCATGCAGAAAACAAAACATGTGGTATATGCTTTGATCAGAAAACAGATTCTGATATGTTCAAAATAAGGTCCAAACTTTTCCAAAGAAGAAAGTGCAAGCACCTCTTTTGTGTTGATTGCATATGCAAGTATGTAGCTGTACAAATAAATGATAATGCTTATAAGGTGATGTGTCCAGGTCCAAATTGTTGTGTGAAGTTTAAGCCAAAACATTTGCGACACATTTTGCCCAAACAACTTATTGCTAAATGGGAGAATTTAATTTACAAGTCTTTGGCTCCGACGGAGCCAAAGACTTACTGCCCTTATCAGAATTGTTCTGTTTTGTTGGTGAAAGGTAATGACATAAGAGGAGATTTTGCCAACAGTTCTAAGTGCCCTTCGTGTGACAGAAACTTTTGCGCCCGGTGCAAAGTTCCATGGCATCCAGGAATGAATTGTCAGAATTTCCAACAAATGAAAAGGAACGACAAAAATGATTTGGATAACAAGTTTTTGGAGTTGGCCAGAATAGCGAAGTGGAAAAGATGTCCAAATTGCTCAATGTATGTCAAGAGAAGTAGTGGATGTAGTTACATGAAATGCAGGTGTGGATGCAAATTCTGCTACAAGTGTGGGAAGAAACGACAATATGCACATTCATGCGGTAGTAGATAG 714 0.3852 MKLSLFRKKDSSKQLSSHTHAENKTCGICFDQKTDSDMFKIRSKLFQRRKCKHLFCVDCICKYVAVQINDNAYKVMCPGPNCCVKFKPKHLRHILPKQLIAKWENLIYKSLAPTEPKTYCPYQNCSVLLVKGNDIRGDFANSSKCPSCDRNFCARCKVPWHPGMNCQNFQQMKRNDKNDLDNKFLELARIAKWKRCPNCSMYVKRSSGCSYMKCRCGCKFCYKCGKKRQYAHSCGSR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05036 237 Gene3D - 164 237 - -
Vivi3g05036 237 SUPERFAMILY RING/U-box 107 172 - -
Vivi3g05036 237 SMART ibrneu5 101 166 IPR002867 GO:0008270
Vivi3g05036 237 SMART ibrneu5 178 234 IPR002867 GO:0008270
Vivi3g05036 237 CDD BRcat_RBR_unk 116 169 - -
Vivi3g05036 237 SUPERFAMILY RING/U-box 22 110 - -
Vivi3g05036 237 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 228 IPR031127 GO:0004842|GO:0016567
Vivi3g05036 237 Pfam IBR domain, a half RING-finger domain 102 166 IPR002867 GO:0008270
Vivi3g05036 237 Pfam IBR domain, a half RING-finger domain 189 234 IPR002867 GO:0008270
Vivi3g05036 237 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Vivi3g05036 237 ProSiteProfiles Zinc finger RING-type profile. 26 78 IPR001841 -
Vivi3g05036 237 ProSiteProfiles TRIAD supradomain profile. 22 237 IPR044066 -
Vivi3g05036 237 SUPERFAMILY RING/U-box 183 234 - -
Vivi3g05036 237 CDD Rcat_RBR_unk 192 227 - -
Vivi3g05036 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 115 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05036 Vivi-Chr3 98447358 98450899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05036 21 225 C3H Transcription Factor Family AT2G19610 28.169 3.49e-20 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05036 K11975 - mtr:25481406 265.388