Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05005 ATGGAGGTTTCATGGGAACAAAGTGTCACCTATTCTATCAACACAATTTACCTTCTCTTCTCTGCTTACTTAGTTTTTGTAATGCAGCTAGGATTTGCCATGATATGTGCAGGTTCTGTCAGGGCCAAAAATGCTATGAACATAATGCTTACAAATGTAGTTGATGCTGTGGTAGGTAGCATCTCTTTCTATCTTTTTGGTTTTGCATTTGCTTATGGCAATTCCAACCCTTTCATTGGTACAAATTTGTTTGCTTTAGCTAACATTCCAAATGAAAATTATGACTATGGATTCTTTCTTTACCAATGGGCTTTTGCAATAGCTGTAGCAGGTATAACTAGTGGGTCCATAGCTGAGAGGACACAATTTAGTGCTTATCTTGTTTTTTCATTTTTCCTTACTGGCTTTGTGTATCCAATTGTGGTCCATTGGGTTTGGTCATCTAGTGGTTGGCTTAGTCCAAATTCAAGTCACTTGTTCTTGGGCTCAGGTGCCATTGACTTTGCTGGGAGTGGAGTGGTGCATTTGGTTGGTGCCATTGCTGGACTTTGGGGGTCTATTATAGAAGGTCCACGGGCCGGGCGGTTTGATGCGTATGGAAAGGCCGTACCTTTCCGCGGTCATAATGCCGCACTTGTGGTTCTGGGGACGTTTTTGTTGTGGTTCGGTTGGTTCGGGTTTAACCCCGGCTCGTTTGACAAGATTCTCGTGGCCTACCCTAACACATTGGATGAAGGTAATTGGACATCGATAGGTCGAACGGCCGTGACAACTACATTGGCGGGTTCAACAGCGGGAATCGTCACATTGTTCGGCCGTCGATTATTGATTGGCCACTGGGATGCAATGGATGTATGCAACGGTTTGATTGGCGGGTTTGTTGCCATCACGTCCGGGTGCTCAGTTGTCGAGCCATGGGCCGCTATTCTATGTGGATTCGTCTCGGCTTGGGTTTTAATCGGGCTCAACATATTAGCACTAAAACTGAACTATGATGATCCATTAGAGGCAGCTCAATTACATGGTGGATGTGGCACTTGGGGATTGTTGTTTACAGGGCTATTTGCCAAAGAGGAGTTTGTGGTTCAAACATATAATGCAGGAGTGGCAGTGAAAAGACCCTATGGTCTTCTACTTGGAGGTGGATGGGGATTGATTGGAGCTCAAGTGGTTGAGATTTTGGTGATCTTTGGATTTGTTAGTATAACTATGGGACCTATGTTCTATGGCTTGCACAAACTTAGGTTGCTGAGAATTCCTGTGGCTGATGAGCTTGCTGGCCTTGATATATCAAGCCATGGAGGCTATGCTTATGCTCATCATGAGGAAAATCATCCTCAATCTTATGGAGATTATATGCGTATGCGACAAGATAATCAATCATAG 1386 0.4423 MEVSWEQSVTYSINTIYLLFSAYLVFVMQLGFAMICAGSVRAKNAMNIMLTNVVDAVVGSISFYLFGFAFAYGNSNPFIGTNLFALANIPNENYDYGFFLYQWAFAIAVAGITSGSIAERTQFSAYLVFSFFLTGFVYPIVVHWVWSSSGWLSPNSSHLFLGSGAIDFAGSGVVHLVGAIAGLWGSIIEGPRAGRFDAYGKAVPFRGHNAALVVLGTFLLWFGWFGFNPGSFDKILVAYPNTLDEGNWTSIGRTAVTTTLAGSTAGIVTLFGRRLLIGHWDAMDVCNGLIGGFVAITSGCSVVEPWAAILCGFVSAWVLIGLNILALKLNYDDPLEAAQLHGGCGTWGLLFTGLFAKEEFVVQTYNAGVAVKRPYGLLLGGGWGLIGAQVVEILVIFGFVSITMGPMFYGLHKLRLLRIPVADELAGLDISSHGGYAYAHHEENHPQSYGDYMRMRQDNQS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05005 461 Gene3D Ammonium transporter AmtB like domains 3 455 IPR029020 -
Vivi3g05005 461 NCBIfam ammonium transporter 14 438 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vivi3g05005 461 PANTHER AMMONIUM TRANSPORTER 10 441 - -
Vivi3g05005 461 Pfam Ammonium Transporter Family 18 438 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vivi3g05005 461 SUPERFAMILY Ammonium transporter 11 419 - -
Vivi3g05005 461 ProSitePatterns Ammonium transporters signature. 167 192 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vivi3g05005 461 FunFam Ammonium transporter 1 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05005 Vivi-Chr3 97046216 97047959 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05005 7 444 Inorganic Solute Cotransporters AT1G64780 66.517 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05005 K03320 - qsa:O6P43_014033 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05005 3 97046216 97047959 Vivi3g05005 3 97046216 97047959 ECH