Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05004 ATGGGAAAGAGTTTGTTTCAAGAATCTCTCAAAGCTCTGGAAGCTGATATTCAGTATGCTAATACACTGGCATTAGAGCATCCAAGGGATAAAGAAGGAGGATGCTTTCAGATGAGGCTATCTTACAGTCCTGTGGCTCCACTTTTTCTCTCTCTTGTTCAATGGACTGATTACCGGCTTGCTGGTGCTCTTGGTTTGCTCAGAATTCTAGTTTTTGTGACATATGGAAATGGGAAAACTACTATTTCAATATATGAAAGGAAAGCAAGCATAAGACAATTTTATTCGGTTATATTTCCTGCTCTGTTGCAACTTCAGAAAGGCATCACAGATTTGGAAGAAAGGAAACAAAAAGAAGTATATGCTATTAGATACCAAAAGAAGACTGATAAAAAAGGTAGAAGAGAATCTGAAATTGACATTGAAAGAGAACAGGAATGTGGAGTTTGCTTGGAAGTGAAAGCTAAAGTTGTGCTGCCTAATTGTTGCCACCAAATGTGCTTTGAGTGTTACAGAGACTGGTGTCTTAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAGTAAACTCTGAGGACCTTTGGATTTACACAGACACAAGTGATATAGTTGATGTTGGAACAATTTTCAAAGAGAATTGTAAGATTCTGTTTCTTTACATAGAAAAGTTACCTCTTATTATTCCAGATCCCAGACATGTGTCCTATGATCCATTTTTTAGGTAG 732 0.3825 MGKSLFQESLKALEADIQYANTLALEHPRDKEGGCFQMRLSYSPVAPLFLSLVQWTDYRLAGALGLLRILVFVTYGNGKTTISIYERKASIRQFYSVIFPALLQLQKGITDLEERKQKEVYAIRYQKKTDKKGRRESEIDIEREQECGVCLEVKAKVVLPNCCHQMCFECYRDWCLRSQSCPFCRDSLKRVNSEDLWIYTDTSDIVDVGTIFKENCKILFLYIEKLPLIIPDPRHVSYDPFFR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05004 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 196 IPR013083 -
Vivi3g05004 243 SMART ring_2 147 184 IPR001841 -
Vivi3g05004 243 SUPERFAMILY RING/U-box 137 190 - -
Vivi3g05004 243 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Vivi3g05004 243 Pfam Zinc finger, C3HC4 type (RING finger) 144 190 - -
Vivi3g05004 243 ProSiteProfiles Zinc finger RING-type profile. 147 185 IPR001841 -
Vivi3g05004 243 PANTHER RING FINGER PROTEIN 41, 151 4 235 - -
Vivi3g05004 243 FunFam RING/U-box superfamily protein 125 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05004 Vivi-Chr3 97041942 97046267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05004 145 218 RAD5 or RAD16-like Gene Family AT5G43530 42.308 3.85e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05004 - - gmx:100808567 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05004 3 97041942 97046267 Vivi3g05004 3 97041942 97046267 ECH