Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05000 ATGGCAAAAACGACGTCGTTGCTTCTCTGTGCACTCTGTCTCTTTGCTACTCTATCTCTTATCCAGGCAAAGAAGGCGAAGGAGGATTTGAAGGAAGTGACTCAAAAGGTTTTCTTTGATGTTGAGATTGATGGAAAAGCTGCAGGTCGGGTTGTAATTGGACTTTTTGGGAAGGCAGTTCCAAAAACTGTAGAAAACTTCCGAGCTCTTTGCACAGGCGAAAAGGGAGTTGGTAAAAGTGGAAAGCCTCTTCATTACAAAGGTAGCTCATTCCATAGGATTATACCTAGCTTTATGATCCAAGGAGGTGATTTTACACACGGTAATGGTATGGGTGGAGAATCAATTTACGGAGAGAAGTTTGCTGATGAGAACTTCAAGCTAAAGCATACCGGACCAGGATTTTTATCAATGGCAAATGCTGGTCCCGATACCAATGGTTCACAATTTTTCATTACGACTGTAACAACAAGCTGGTTGGATGGAAGGCATGTTGTTTTTGGAAAGGTGCTTTCAGGAATGGATGTTGTTTACAAGGTTGAAGCCGAAGGAACTCAAAGCGGAACTCCCAAGACCAAGGTTGTGATTGCAGATAGTGGTGAACTACCTCTGTAA 615 0.4276 MAKTTSLLLCALCLFATLSLIQAKKAKEDLKEVTQKVFFDVEIDGKAAGRVVIGLFGKAVPKTVENFRALCTGEKGVGKSGKPLHYKGSSFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGTQSGTPKTKVVIADSGELPL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05000 204 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 38 201 IPR002130 GO:0000413|GO:0003755
Vivi3g05000 204 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 86 103 IPR020892 GO:0003755|GO:0006457
Vivi3g05000 204 Gene3D - 22 203 IPR029000 -
Vivi3g05000 204 FunFam Peptidyl-prolyl cis-trans isomerase 30 203 - -
Vivi3g05000 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 162 177 IPR002130 GO:0000413|GO:0003755
Vivi3g05000 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 55 70 IPR002130 GO:0000413|GO:0003755
Vivi3g05000 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 149 IPR002130 GO:0000413|GO:0003755
Vivi3g05000 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 91 103 IPR002130 GO:0000413|GO:0003755
Vivi3g05000 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 149 161 IPR002130 GO:0000413|GO:0003755
Vivi3g05000 204 SUPERFAMILY Cyclophilin-like 33 202 IPR029000 -
Vivi3g05000 204 CDD cyclophilin_ABH_like 36 200 - -
Vivi3g05000 204 PIRSF Peptidylpro_ismrse 19 203 IPR024936 GO:0003755
Vivi3g05000 204 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 36 202 - -
Vivi3g05000 204 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 39 198 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05000 Vivi-Chr3 96863615 96866449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05000 49 181 U-box Gene Family AT5G67530 47.015 2.54e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05000 K01802 - gmx:100792140 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05000 3 96863615 96866449 Vivi3g05000 3 96863615 96866449 ECH