Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04999 ATGTGGCAAACAAACAATGAAGAAATTGCAAGGTTCCAATTTCAACGAGTGGGAGTGATTTCTGAAAGAGCTCCATTATTGTCTCGAAAAGACAGTGATCTTACAAGTTGGAGTTCATCTTATGATTCTTTCTCAAGTGATGAAGAGAATTCTAGTGAAGGAAAGTCAATAATAGAAGGAGAAACTAGCAATAATGATCTTAGATGTTTGTGTGTTATCTGCTTTGAAGCAAGAAGGGATTGCTTTTTTCTACCATGTGGCCATTTTGCAACATGCTATGCTTGTGGAACAAGAATTGCTGCAGAAACTTGCACTTGTCCAATTTGCAGAAGGAAAATGAAGAAACTAAGAAAAATTTATATTGTGTAG 369 0.3577 MWQTNNEEIARFQFQRVGVISERAPLLSRKDSDLTSWSSSYDSFSSDEENSSEGKSIIEGETSNNDLRCLCVICFEARRDCFFLPCGHFATCYACGTRIAAETCTCPICRRKMKKLRKIYIV 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04999 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 122 IPR013083 -
Vivi3g04999 122 MobiDBLite consensus disorder prediction 31 47 - -
Vivi3g04999 122 SUPERFAMILY RING/U-box 70 116 - -
Vivi3g04999 122 ProSiteProfiles Zinc finger RING-type profile. 71 110 IPR001841 -
Vivi3g04999 122 MobiDBLite consensus disorder prediction 29 59 - -
Vivi3g04999 122 Pfam Zinc finger, C3HC4 type (RING finger) 69 115 - -
Vivi3g04999 122 PANTHER OS05G0521000 PROTEIN 20 121 - -
Vivi3g04999 122 SMART ring_2 71 109 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04999 Vivi-Chr3 96799112 96799801 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04999 71 119 C3H Transcription Factor Family AT3G06140 36.735 1.29e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04999 - - vvo:131656389 223.016