Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04997 ATGACACCATTATCTCTCCTTTTCATCTTCGCCGTTAGTTTCACCATAACCACCGTGAACACCCTCGGCACCGCCTCCACAACCGCCATCACCTCCCACACCTCCACCATCTGCGGCATAGTCGCCGGAAAGCCTCACCAATACATCCAATGCTACCAAAACGGGAAACTCATTCCAACATTCCTCCCCAACGTTTCGTTTCAGTCTATCTCAGGTGGCCGGAGCTTCTTCTGCGGCCTCCGTTCGAATGGCCTCAGTCTCCATTGTTGGGATACAACGACTCCAACGTCTTTTCTCAAACCGAAAAGATTGTATCACAGTGAAAAGGTTGAGCTGAGTGATGTAGCGGTTGGTGATGGTCATGTCTGTGCTAGAGAGTTGCACTCTGGTGTGGTCAAGTGTTGGAGAGGCTATGGTGGAGTTGAGTTTCCTTCTCCTGATGAAAGTTTTCGGTTTCGAAGTGTTACTTGTGGTTATGGTTTTTGTTGTGGAATATTGAAGGTGAGTTATAGAGTTTCTTGTTGGGGTGTAAATGGAAAAAGTGGTATTGAGAATTTGATTCAGAAACAGTTTGAGAATGTATCAATGTCAACGTTGGTTTCTGGTGTTTCCCATGTTTGTGGTTTAACTGTTAATGGAGTTTTGGTTTGTAAAGGGAAGAAGAACAAGAACAATGATTATGGTAAGTTAAATGTTCCTTTGAATTCTGGTTCAGTTTTTTCAGGTCTTGCATTAGGTGAAAACTTCACTTGTGCTATTAGAATCAAAAATGGGTTTGTTCAATGTTGGGGTGACGATTTCGATAGCGATGATGTGATGAAAGGTGTTTCTTTTGAGTCAATTGTTGCTGGTTTGGATTTTGTTTGTGGTTTAACAACTAGGAATTTGTCTCTAGTTTGTTGGGGTAACCCTAATTGGTATTCTAAGCCTCATTTGATTAGTGATGTTTATGTTCCATTAGGAATGATTCTTCCTAGTCCATGTGTTGTTAGTGATTCTTGTAGCTCTTGTGGTGTGTATCCAAATTCTGATTTTCTTTGTCATGGATTTGGGACTATTTGTTATCAATGTCGAAGGGAGTTTCCGTTCGCCGCGCGATTGCCACCGCCGATGATATCGCCTAAGAATCAATCTTCTATAGATGATGAAGAAAAAGGCGAAAAAGGCTTACGGGGTTGGAAATTGATGATGTTTCTGATTATTGGATCAGTTGGTGCTTTTGCAGGATTATGTACTATTCTTTATTTTCTTATGATTGGTGCTAGAAAATTGGTAAAGGCGAAAATCGATAATTCGGTTCAACCTACTAGTAGTGAATCTGATGATGCTTATGTTGATATAGCTCCAATGCAGAACAATGGAACAACAACAACATTAAGATCTTTTTCGAGCAAACGACATAGCTCGAGTAGGTTAAGAAGCTGTTCATCTTCGAAGAACCTAGACAGAACCGAGAGTTTCACGTTTTGGGAATTAGTTTCAGCTAGTGACAATTTCTCAGTTGAAAACAAAATTGGTGCTGGTAGTTTTGGATGTGTTTACAAAGGGAGATTACTAGACGGCCGCGAAGTCGCGATTAAAAGAGGCGATACAACATGCGCAAAGAAGAAGAAATTCCAAGAGAAAGAAACATCTTTTGATTCTGAGATAACATTGTTATCAAGGCTTCACCATAAGCATTTGGTGAGACTAATTGGTTTCTGCGAAGAGAACGACGAGAGGCTTCTGGTTTACGAGTACATGAGCAACGGATCACTTCATGATCACTTGCATGATAAGAGCAATGTCGAGAAAAACAGCAGCATTATGAACTCCTGGAAAATGAGAATCAAAGTTGCGTTAGACGCTGCGAGAGGGATCGAGTACATTCATAACTACGCGGTTCCGCCGATTATTCATAGAGACATTAAATCCTCAAACATACTTCTCGATTCAAAATGGAACGCTAGAGTATCCGACTTTGGATTATCGTTAATCTGGCAAGAAACCGAACAAGAACCGATGTCGGACACGAAAGCGGTTGGGACGGTTGGTTACATAGATCCGGAGTACTATGTATTGAATGTTTTGACAACAAAAAGTGATGTTTATGGTTTAGGTGTTGTGATGTTGGAGCTTTTGACAGGTAAAAGAGCAGTGTTTAAAACCGAAGACGGTTCGAGTCCTATTGGTGTGGTGGAGTATGCAGCACCAAGGATTGGTTCAGGAGAGGTGTGGAATTTGTTGGATGATAGAGTTGGAATGCCTGAAGTGAATGAAGTTGAATCTGTTGAGATTATGGCTTATACTGCTATGCATTGTGTGAATTTGGAGGGTAAAGATAGGCCTAATATGGTTGATATTGTTGCTAATTTGGAAAGAGCTTTGTCTTTTCTTGAGGGTAGTCCTGGTAGTTTTTCTATGTCTTCATTTTCTGTTACTCTTACATGA 2430 0.4091 MTPLSLLFIFAVSFTITTVNTLGTASTTAITSHTSTICGIVAGKPHQYIQCYQNGKLIPTFLPNVSFQSISGGRSFFCGLRSNGLSLHCWDTTTPTSFLKPKRLYHSEKVELSDVAVGDGHVCARELHSGVVKCWRGYGGVEFPSPDESFRFRSVTCGYGFCCGILKVSYRVSCWGVNGKSGIENLIQKQFENVSMSTLVSGVSHVCGLTVNGVLVCKGKKNKNNDYGKLNVPLNSGSVFSGLALGENFTCAIRIKNGFVQCWGDDFDSDDVMKGVSFESIVAGLDFVCGLTTRNLSLVCWGNPNWYSKPHLISDVYVPLGMILPSPCVVSDSCSSCGVYPNSDFLCHGFGTICYQCRREFPFAARLPPPMISPKNQSSIDDEEKGEKGLRGWKLMMFLIIGSVGAFAGLCTILYFLMIGARKLVKAKIDNSVQPTSSESDDAYVDIAPMQNNGTTTTLRSFSSKRHSSSRLRSCSSSKNLDRTESFTFWELVSASDNFSVENKIGAGSFGCVYKGRLLDGREVAIKRGDTTCAKKKKFQEKETSFDSEITLLSRLHHKHLVRLIGFCEENDERLLVYEYMSNGSLHDHLHDKSNVEKNSSIMNSWKMRIKVALDAARGIEYIHNYAVPPIIHRDIKSSNILLDSKWNARVSDFGLSLIWQETEQEPMSDTKAVGTVGYIDPEYYVLNVLTTKSDVYGLGVVMLELLTGKRAVFKTEDGSSPIGVVEYAAPRIGSGEVWNLLDDRVGMPEVNEVESVEIMAYTAMHCVNLEGKDRPNMVDIVANLERALSFLEGSPGSFSMSSFSVTLT 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04997 809 Gene3D Phosphorylase Kinase; domain 1 471 580 - -
Vivi3g04997 809 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 193 795 IPR044815 GO:0004674
Vivi3g04997 809 Gene3D Transferase(Phosphotransferase) domain 1 581 793 - -
Vivi3g04997 809 SUPERFAMILY RCC1/BLIP-II 112 352 IPR009091 -
Vivi3g04997 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Vivi3g04997 809 CDD STKc_IRAK 505 787 - -
Vivi3g04997 809 SMART serkin_6 499 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04997 809 ProSiteProfiles Protein kinase domain profile. 499 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04997 809 FunFam receptor-like protein kinase FERONIA 461 580 - -
Vivi3g04997 809 ProSitePatterns Protein kinases ATP-binding region signature. 505 536 IPR017441 GO:0005524
Vivi3g04997 809 FunFam Serine/threonine-protein kinase-like protein CCR4 581 799 - -
Vivi3g04997 809 Gene3D - 22 327 IPR009091 -
Vivi3g04997 809 Pfam Protein kinase domain 500 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g04997 809 SUPERFAMILY Protein kinase-like (PK-like) 476 785 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04997 Vivi-Chr3 96725915 96728786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04997 14 800 Receptor kinase-like Gene Family AT3G55950 51.241 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vivi3g04997 Pkinase 8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04997 - - gmx:100802403 1012.68