Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04994 ATGTGCAACGGTTCGAATATAAAACCCTCTCAAACTGGTTTGATTAATAATCATGAATATGGAAGACAAGAAGAACTGCATCATAAGATTTCTGATTTGCTTGTGTTTTCGGCCACAGATGATATAATAGCTTTCAGAGAAGCTGTTGAAAAAGACGATCATGAGGTCGATGAAGTAGGGTTGTGGTATGGAAGGAGGATTGGCTCAAAGGAAATGGGATATGAAGAGAGGACACCTCTCATGATTGCTTCTTTATTTGGCAGCAGGGCTGTATTGTCTTATATTCTCGAAACCGATCGTGTCGATGTTAATCAAGCGTGTGGATCGGATAGGGCTACTGCTCTTCATTGTGCTGTTTCTGGTTGTTCTACTGCTTCTGCGGAGGTTATCAAGCTTTTGCTTGATGCACGTGCAGATGTTGGTTCTGTTGATGCGAATGGTAACCGGTGCAGTGACTTGATTGTCATGATGTCTATCTCTGGTTCAAGGAAGAGGAAACTACAAACCATACTAGAAGGAATCGATGATATTGATGATGACAGTGATTTCCTTAAGGAAGTAGGTTTCCAAATGGAGAAGCAGCAACAAGATATCGGTACACCTCAAATCGAGAAGAAAGATAATCTGATTGATCTATCCCTACCCGACATAAATAATGGGATTTATAGTACAGATGAATTTAGGATGTATATATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACCGAGTGTCCCTTTGTTCATCCGGGGGAAAACGCAAGGCGCCGTGATCCGATGATATATCAATACACATGTGTCCCTTGTCCTGAGTTTCGGAAGGGATCATGCAGTAAAGGGGATGGTTGTGAATATGCACATGGTATTTTTGAGAGCTGGCTTCATCCTGCTCAATATAGAACAAGGATTTGCAAGGATGAGACTCAATGCACCCGAAGAGTCTGCTTTTTTGCTCACAAACCCGAGGAGCTTCGCCCATTGTATGCTTCTACTGGTTCTGCTTTGCCTTCACCTATATCCTATTCAAATTCACCTACTGCTTCTTCAATGGATTCTTTCATATTGAGCTCTCCGTCCAGTTCGATACAATCCATGTCGACTTCGCCTTTGACTCCATCAGCAGCGTCTTCCCTTGCAGGTGGAACCATGTGGCCGACTCAGTCTCATGCTGCGGTCCCTATACTTCAGATGCCCAGAAGCAGATTGAAAACTGCATTGAAAGTTAGAGATAATACTGAATTTCTTGAAGTTGAAAATCTCCTTATGCAGAAGCTAATGCTTGAAGAGAATACAGGTCTTTCATTCCCTTCAAACAGGGTTGCAGCTGTGAATCCTGCTAACCTAGAAGACATTCTCGATTCTCAGATACAATCTCCAACATCGACTCATGTGCATCCGAATGTGACTCAGCAACTTTGGGGCTTTTCTTCTGACCTTACCAATTCAAATGTGATTGGTTCACCACAGACTCTAGATCCGTCTTCGAATTCATTAAATGATGTCTTGGCAAAGCGGTGCCAGAGTTTTATCGAGCGCAGCAGCATGGCGAGCTTTAGTTCTAAGCTTCCTTCTGCTACCTCAGTTGCTATGGAGCCATATAGTAACTTCTCTGGTTGGGGCTCCCCTGATGGAAAATTAGACTGGTCCATCCATGGTGATGAACTGATTAAGATGAAAAAGTCCTATTCTTTCCGTTTACGAAACCAACTTAGCAATTCATCAGTGATTTCACAAAGTGCTGATGATCAAGATGTACTACTAAGTCAGGAATCATGGGTTAACTCACTTGTGAAGGACCCACCAACAGCGAAATCGGATCCATATTGTGTTGAAGTGTAA 1848 0.4264 MCNGSNIKPSQTGLINNHEYGRQEELHHKISDLLVFSATDDIIAFREAVEKDDHEVDEVGLWYGRRIGSKEMGYEERTPLMIASLFGSRAVLSYILETDRVDVNQACGSDRATALHCAVSGCSTASAEVIKLLLDARADVGSVDANGNRCSDLIVMMSISGSRKRKLQTILEGIDDIDDDSDFLKEVGFQMEKQQQDIGTPQIEKKDNLIDLSLPDINNGIYSTDEFRMYIFKVKPCSRAYSHDWTECPFVHPGENARRRDPMIYQYTCVPCPEFRKGSCSKGDGCEYAHGIFESWLHPAQYRTRICKDETQCTRRVCFFAHKPEELRPLYASTGSALPSPISYSNSPTASSMDSFILSSPSSSIQSMSTSPLTPSAASSLAGGTMWPTQSHAAVPILQMPRSRLKTALKVRDNTEFLEVENLLMQKLMLEENTGLSFPSNRVAAVNPANLEDILDSQIQSPTSTHVHPNVTQQLWGFSSDLTNSNVIGSPQTLDPSSNSLNDVLAKRCQSFIERSSMASFSSKLPSATSVAMEPYSNFSGWGSPDGKLDWSIHGDELIKMKKSYSFRLRNQLSNSSVISQSADDQDVLLSQESWVNSLVKDPPTAKSDPYCVEV 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04994 615 Gene3D - 37 175 IPR036770 -
Vivi3g04994 615 SMART c3hfinal6 301 324 IPR000571 GO:0046872
Vivi3g04994 615 SMART c3hfinal6 266 292 IPR000571 GO:0046872
Vivi3g04994 615 FunFam Zinc finger CCCH domain-containing protein 66 224 292 - -
Vivi3g04994 615 PANTHER UNKEMPT FAMILY MEMBER 36 602 IPR045234 -
Vivi3g04994 615 Pfam Ankyrin repeats (3 copies) 72 142 IPR002110 GO:0005515
Vivi3g04994 615 SMART ANK_2a 75 105 IPR002110 GO:0005515
Vivi3g04994 615 SMART ANK_2a 110 142 IPR002110 GO:0005515
Vivi3g04994 615 ProSiteProfiles Zinc finger C3H1-type profile. 266 293 IPR000571 GO:0046872
Vivi3g04994 615 Gene3D - 266 329 - -
Vivi3g04994 615 SUPERFAMILY Ankyrin repeat 44 156 IPR036770 -
Vivi3g04994 615 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04994 Vivi-Chr3 96349778 96352706 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04994 25 567 C2H2 Transcription Factor Family AT5G12850 40.492 3.11e-132 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi3g04994 Ank_2 1.1e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04994 - - psat:127084564 908.672