Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04993 ATGTGCAACGATGATATAATAGCTTTCAGAGAAGCTGTTGAAAAAGACGATCATGAGGTCGATGAAGTAGGGTTGTGGTATGGAAGGAGGATTGGCTCAAAGGAAATGGGATATGAAGAGAGGACACCTCTCATGATTGCTTCTTTATTTGGCAGCAGGGCTGTATTGTCTTATATTCTCGAAACCGATCGTGTCGATGTTAATCAAGCGTGTGGATCGGATAGGGCTACTGCTCTTCATTGTGCTGTTTCTGGTTGTTCTACTGCTTCTGCGGAGGTTATCAAGCTTTTGCTTGATGCACGTGCAGATGTTGGTTCTGTTGATGCGAATGGTAACCGGTGCAGTGACTTGATTGTCATGATGTCTATCTCTGGTTCAAGGAAGAGGAAACTACAAACCATACTAGAAGGAATCGATGATATTGATGATGACAGTGATTTCCTTAAGGAAGTAGGTTTCCAAATGGAGAAGCAGCAACAAGATATCGGTACACCTCAAATCGAGAAGAAAGATAATCTGATTGATCTATCCCTACCCGACATAAATAATGGGATTTATAGTACAGATGAATTTAGGATGTATATATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACCGAGTGTCCCTTTGTTCATCCGGGGGAAAACGCAAGGCGCCGTGATCCGATGATATATCAATACACATGTGTCCCTTGTCCTGAGTTTCGGAAGGGATCATGCAGTAAAGGGGATGGTTGTGAATATGCACATGGTATTTTTGAGAGCTGGCTTCATCCTGCTCAATATAGAACAAGGATTTGCAAGGATGAGACTCAATGCACCCGAAGAGTCTGCTTTTTTGCTCACAAACCCGAGGAGCTTCGCCCATTGTATGCTTCTACTGGTTCTGCTTTGCCTTCACCTATATCCTATTCAAATTCACCTACTGCTTCTTCAATGGATTCTTTCATATTGAGCTCTCCGTCCAGTTCGATACAATCCATGTCGACTTCGCCTTTGACTCCATCAGCAGCGTCTTCCCTTGCAGGTGGAACCATGTGGCCGACTCAGTCTCATGCTGCGGTCCCTATACTTCAGATGCCCAGAAGCAGATTGAAAACTGCATTGAAAGTTAGAGATAATACTGAATTTCTTGAAGTTGAAAATCTCCTTATGCAGAAGCTAATGCTTGAAGAGAATACAGGTCTTTCATTCCCTTCAAACAGGGTTGCAGCTGTGAATCCTGCTAACCTAGAAGACATTCTCGATTCTCAGATACAATCTCCAACATCGACTCATGTGCATCCGAATGTGACTCAGCAACTTTGGGGCTTTTCTTCTGACCTTACCAATTCAAATGTGATTGGTTCACCACAGACTCTAGATCCGTCTTCGAATTCATTAAATGATGTCTTGGCAAAGCGGTGCCAGAGTTTTATCGAGCGCAGCAGCATGGCGAGCTTTAGTTCTAAGCTTCCTTCTGCTACCTCAGTTGCTATGGAGCCATATAGTAACTTCTCTGGTTGGGGCTCCCCTGATGGAAAATTAGACTGGTCCATCCATGGTGATGAACTGATTAAGATGAAAAAGTCCTATTCTTTCCGTTTACGAAACCAACTTAGCAATTCATCAGTGATTTCACAAAGTGCTGATGATCAAGATGTACTACTAAGTCAGGAATCATGGGTTAACTCACTTGTGAAGGACCCACCAACAGCGAAATCGGATCCATATTGTGTTGAAGTGTAA 1740 0.431 MCNDDIIAFREAVEKDDHEVDEVGLWYGRRIGSKEMGYEERTPLMIASLFGSRAVLSYILETDRVDVNQACGSDRATALHCAVSGCSTASAEVIKLLLDARADVGSVDANGNRCSDLIVMMSISGSRKRKLQTILEGIDDIDDDSDFLKEVGFQMEKQQQDIGTPQIEKKDNLIDLSLPDINNGIYSTDEFRMYIFKVKPCSRAYSHDWTECPFVHPGENARRRDPMIYQYTCVPCPEFRKGSCSKGDGCEYAHGIFESWLHPAQYRTRICKDETQCTRRVCFFAHKPEELRPLYASTGSALPSPISYSNSPTASSMDSFILSSPSSSIQSMSTSPLTPSAASSLAGGTMWPTQSHAAVPILQMPRSRLKTALKVRDNTEFLEVENLLMQKLMLEENTGLSFPSNRVAAVNPANLEDILDSQIQSPTSTHVHPNVTQQLWGFSSDLTNSNVIGSPQTLDPSSNSLNDVLAKRCQSFIERSSMASFSSKLPSATSVAMEPYSNFSGWGSPDGKLDWSIHGDELIKMKKSYSFRLRNQLSNSSVISQSADDQDVLLSQESWVNSLVKDPPTAKSDPYCVEV 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04993 579 Gene3D - 230 293 - -
Vivi3g04993 579 SMART ANK_2a 74 106 IPR002110 GO:0005515
Vivi3g04993 579 SMART ANK_2a 39 69 IPR002110 GO:0005515
Vivi3g04993 579 ProSiteProfiles Ankyrin repeat profile. 74 109 IPR002110 GO:0005515
Vivi3g04993 579 ProSiteProfiles Zinc finger C3H1-type profile. 230 257 IPR000571 GO:0046872
Vivi3g04993 579 SMART c3hfinal6 230 256 IPR000571 GO:0046872
Vivi3g04993 579 SMART c3hfinal6 265 288 IPR000571 GO:0046872
Vivi3g04993 579 FunFam Zinc finger CCCH domain-containing protein 66 188 256 - -
Vivi3g04993 579 Gene3D - 6 139 IPR036770 -
Vivi3g04993 579 PANTHER UNKEMPT FAMILY MEMBER 3 566 IPR045234 -
Vivi3g04993 579 Pfam Ankyrin repeats (3 copies) 36 106 IPR002110 GO:0005515
Vivi3g04993 579 SUPERFAMILY Ankyrin repeat 4 121 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04993 Vivi-Chr3 96349777 96352434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04993 2 531 C2H2 Transcription Factor Family AT5G12850 40.201 3.45e-128 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi3g04993 Ank_2 9.7e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04993 - - psat:127084564 843.958