Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04990 ATGTGCAACGGTTCGAATATAAAACCGTCTCAAAATAATCATGAATATGGAAGACAAGAAGAGCTGCATCATAAGATTTCTGATTTGCTTCTGTTTTCAGCCACAGATGATGTAATTGCTTTCAGAGAGGCCGTTGAAAAAAGCAATCATGATGTCGATGAAGTAGGGTTGTGGTATGGAAGGAGGATTGGCTCAAAGGAAACGGGATATGAAGAGAGGACACCTCTTATGATTGCTTCTTTATTTGGAAGCAAAGCGGTATTGTCTTATATACTTCAAACTGGTCGTGTCGATGTTAACAAAGCGTGTGGGTCGGATAGGGCTACTGCTCTTCATTGTGCTGTATCTGGTTGTTCTGCTGCTTCTGCTGAGGTTATCAAGCTTTTGCTTGATGCACATGCAGATGTTGGTTCTGTTGATGCGAACGGTAACCGGTGCAGTGACTTGATTGGCAGGATGTCTAATAGTATCTCCGGTTCAACGAAGAGGAAACTACAAGCATTACTAGAAGGTATCGATGATGTTGATGAAGACGATGGTTTTCTTAAGGAATTAGGTTTCCAGATGGAGAAGCAGCAAGAAGATATCGGTACACCTCGAATCGATAAGAAAGATTATTCGATTGATCTGTCCCTACCCGACATAAATAATGGGATATATATTACAGATGAATTTAGGATGTTTATTTTCAAAGTGAAACCTTGTTCAAGGGCTTATTCTCATGATTGGACAGAGTGTCCTTTTGTTCATCCTGGAGAAAACGCAAGGCGCCGTGATCCGACGATGTATCAATACACCTGTCTCCCTTGTCCTGAGTTTCGGAAGGGATCATGCAGTAATGGGGATGGTTGTGAATATGCACATGGTATTTTTGAGTGCTGGCTTCATCCTGCTCAATACAGAACAAGACTTTGCAAGGATGAGACCCAATGCACCCGAAGAGTCTGCTTTTTCGCACACAAACCCGAGGAGCTTCGCCCATTGTATGCTTCTACTGGTTCTGCTTTGCCATCACCTATATCATATTCAAATTCACCTACTGCTTCTTCAATGGATTCTTTCACATTGAGCTCTCCGTCCAGTTCGATACAATCCATGTCTACACCGCCTTTGACTCCATCTGCAGCGTCTTCTCCAGCAGGTGGAACCATGTTGCGGACTCACTCTCATGCTGCGGTCCCTACACTTCAGATGCCGAGAAGAAGATTGAAAACTACATTGGACACTAGAGATAATACTGAATTTCTCGAACTTGAAAATCGCCTTATGCAGAAGCTAATGATTGAAGAGATGACAGGTCTATCATTGCCTTCAAATAGGCTTGCAGTTGTGAATCCTTCTACCCTCGAAGACACTCTCAATTCTCAGATACAATCACCAACATCAACTCATGTGCATCCGAATGTGACTCAGCAACTATGGGGCTTTTCTTCTGACCTTACCAATTCAAATGTGATTGGTTCCCCACAGGTCACTAATAATCCCTCTTCGAATTCAAAAAATGATGCCTTGGCCAAGCGTCGCCAGAGTTTTATCGAGCACAGCAGCATGGCGAGTTTTAGTGCTCAGCTTCCTTCTGCTACCTCGATTGCTATGGAGCCATATAGTAACTTCTCTGGTTGGGGCTCCCCTGATGGAAAATTAGACTGGTCCATCCGTGGTGATGAACTGAATAAGATGAGAAAGTCTTATTCTTTCGGCTTTCAAAACCGAAGTTGCAATTCAACAATGGTTGGACAAAATGCTGATGATCGAGATGTATTACTAAGTCTGGAATCATGGGTTAATTCACTTGTGAAGGATGTACCAACAGCGAAGTCGGATCAATATTGTGTTGCAGTGTAA 1845 0.4293 MCNGSNIKPSQNNHEYGRQEELHHKISDLLLFSATDDVIAFREAVEKSNHDVDEVGLWYGRRIGSKETGYEERTPLMIASLFGSKAVLSYILQTGRVDVNKACGSDRATALHCAVSGCSAASAEVIKLLLDAHADVGSVDANGNRCSDLIGRMSNSISGSTKRKLQALLEGIDDVDEDDGFLKELGFQMEKQQEDIGTPRIDKKDYSIDLSLPDINNGIYITDEFRMFIFKVKPCSRAYSHDWTECPFVHPGENARRRDPTMYQYTCLPCPEFRKGSCSNGDGCEYAHGIFECWLHPAQYRTRLCKDETQCTRRVCFFAHKPEELRPLYASTGSALPSPISYSNSPTASSMDSFTLSSPSSSIQSMSTPPLTPSAASSPAGGTMLRTHSHAAVPTLQMPRRRLKTTLDTRDNTEFLELENRLMQKLMIEEMTGLSLPSNRLAVVNPSTLEDTLNSQIQSPTSTHVHPNVTQQLWGFSSDLTNSNVIGSPQVTNNPSSNSKNDALAKRRQSFIEHSSMASFSAQLPSATSIAMEPYSNFSGWGSPDGKLDWSIRGDELNKMRKSYSFGFQNRSCNSTMVGQNADDRDVLLSLESWVNSLVKDVPTAKSDQYCVAV 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04990 614 Pfam Ankyrin repeats (3 copies) 64 138 IPR002110 GO:0005515
Vivi3g04990 614 Gene3D - 266 327 - -
Vivi3g04990 614 MobiDBLite consensus disorder prediction 347 382 - -
Vivi3g04990 614 ProSiteProfiles Ankyrin repeat profile. 106 141 IPR002110 GO:0005515
Vivi3g04990 614 FunFam Zinc finger CCCH domain-containing protein 265 327 - -
Vivi3g04990 614 SUPERFAMILY Ankyrin repeat 40 149 IPR036770 -
Vivi3g04990 614 SMART ANK_2a 71 101 IPR002110 GO:0005515
Vivi3g04990 614 SMART ANK_2a 106 138 IPR002110 GO:0005515
Vivi3g04990 614 PANTHER UNKEMPT FAMILY MEMBER 32 602 IPR045234 -
Vivi3g04990 614 Gene3D - 24 176 IPR036770 -
Vivi3g04990 614 ProSiteProfiles Zinc finger C3H1-type profile. 269 291 IPR000571 GO:0046872
Vivi3g04990 614 SMART c3hfinal6 266 290 IPR000571 GO:0046872
Vivi3g04990 614 SMART c3hfinal6 299 322 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04990 Vivi-Chr3 96330073 96332149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04990 21 567 C2H2 Transcription Factor Family AT5G12850 39.448 5.51e-129 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi3g04990 Ank_2 2.2e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04990 - - psat:127084564 907.901